BQ623827

Overview
NameBQ623827
Unique NameBQ623827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1975 contig Csv1_Contig1975:361..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 3
Query:   99 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASF--LLGWG-ITIGAG-LASYPI 614
            +++ G+LSLWRGN  NV++  P  A+ F   +  KR    +++     + F                 +Y ++  +TRL       ++ G  Q+ GL+D  K+ L+ +G    YRG+  + +GII Y G+   +Y++LK   L     +S       LLG G I+   G +ASYP+
Sbjct:  232 IQEGGVLSLWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQETLHVQERFVAGSLAGATAQT----IIYPMEVLKTRLT-----LRRTG--QYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNRWLQQYSHESANPGILVLLGCGTISSTCGQIASYPL 396          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 55/180 (30.56%), Postives = 80/180 (44.44%), Query Frame = 3
Query:    3 RVKLLIQNQDEMIKSGRLSHPYK--GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKT-LKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLT 530
            RVK+L+Q  +         H Y+  G+        K EG L L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G+I  +K    K  G  G YRG   + +G+  Y G+ F  + +LK V L+
Sbjct:   57 RVKVLLQAHN---------HHYRHLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGVSGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLS 217          
The following BLAST results are available for this feature:
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SCMC3_MOUSE8.585e-1128.98Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_BOVIN8.585e-1130.56Graves disease carrier protein OS=Bos taurus GN=SL... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01006 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01006 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623827 ID=BQ623827; Name=BQ623827; organism=Citrus sinensis; type=EST; length=618bp
AGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGATCAAGAGTGGT
CGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTGGTAGAACTGT
TAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACTGCCAATGTTA
TCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAAGGATTACTTT
AAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACTGGAAGTGGTT
TGCTGGGAACTTGGCATCTGGTGGGGCTGCTGGTGCTTCATCGCTTCTTT
TTGTGTATTCGCTTGACTATGCAAGAACACGTTTGGCAAATGATGCTAAG
GCAGCTAAAAAGGGTGGGGAAAGGCAGTTTAATGGTTTGATTGATGTCTA
CAAGAAGACTCTGAAATCTGATGGCATTGCTGGGCTCTACCGTGGATTCA
GCATCTCATGTGTTGGAATTATAGTGTATCGTGGGCTCTACTTTGGAATG
TACGATTCTCTAAAACCTGTGGTGTTGACTGATGGGATGCAGGATAGTTT
CTTGGCTAGCTTCTTACTTGGCTGGGGAATCACAATTGGTGCTGGTTTGG
CTTCTTACCCAATTGATA
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