BQ623832 | Citrus Genome Database

Overview


Name	BQ623832
Unique Name	BQ623832
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	580

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2225	contig	Csv1_Contig2225:39..616.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.496e-56
Identity = 97/118 (82.20%), Postives = 105/118 (88.98%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 24.2534 bits (51), Expect = 4.496e-56
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDRDKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.496e-56
Identity = 97/118 (82.20%), Postives = 105/118 (88.98%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 24.2534 bits (51), Expect = 4.496e-56
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDRDKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.496e-56
Identity = 97/118 (82.20%), Postives = 105/118 (88.98%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 24.2534 bits (51), Expect = 4.496e-56
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDRDKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.496e-56
Identity = 97/118 (82.20%), Postives = 105/118 (88.98%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 24.2534 bits (51), Expect = 4.496e-56
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDRDKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.496e-56
Identity = 97/118 (82.20%), Postives = 105/118 (88.98%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 24.2534 bits (51), Expect = 4.496e-56
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDRDKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 5.861e-56
Identity = 92/118 (77.97%), Postives = 106/118 (89.83%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            M+ KRI KEL DL +DPP+SCSAGPV +D++HWQA+IMGP DSPYAGGVF ++IHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDP
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDP 118

HSP 2 Score: 31.5722 bits (70), Expect = 5.861e-56
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAH+YK D+ +YE+T
Sbjct:  119 LVPEIAHIYKQDRKKYEAT 137

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 9.962e-56
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 25.7942 bits (55), Expect = 9.962e-56
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L P+IA +YKSDK +Y
Sbjct:  119 LVPDIAQIYKSDKEKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 9.962e-56
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 25.7942 bits (55), Expect = 9.962e-56
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L P+IA +YKSDK +Y
Sbjct:  119 LVPDIAQIYKSDKEKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 9.962e-56
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 25.7942 bits (55), Expect = 9.962e-56
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L P+IA +YKSDK +Y
Sbjct:  119 LVPDIAQIYKSDKEKY 134

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.299e-55
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 24.6386 bits (52), Expect = 1.299e-55
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDREKY 134

The following BLAST results are available for this feature:

BLAST of BQ623832 vs. ExPASy Swiss-Prot

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266


Match Name	E-value	Identity	Description
UB2D3_PONAB	4.496e-56	82.20	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]
UB2D3_MOUSE	4.496e-56	82.20	Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus...	[more]
UB2D3_MACFA	4.496e-56	82.20	Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci...	[more]
UB2D3_HUMAN	4.496e-56	82.20	Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens...	[more]
UB2D2_PIG	4.496e-56	82.20	Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G...	[more]
UBC4_CANAL	5.861e-56	77.97	Ubiquitin-conjugating enzyme E2 4 OS=Candida albic...	[more]
UB2D1_MOUSE	9.962e-56	79.66	Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus...	[more]
UB2D1_HUMAN	9.962e-56	79.66	Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens...	[more]
UB2D1_BOVIN	9.962e-56	79.66	Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G...	[more]
UBCD1_DROME	1.299e-55	81.36	Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00912 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00912 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623832 ID=BQ623832; Name=BQ623832; organism=Citrus sinensis; type=EST; length=580bp
GCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATC
TGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTC
TGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAA
TAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAG
GATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGA
AGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATAGCCCAT
ATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGATTATCCT
TTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACAT
CAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAGTC
CAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACT
GATCCAAATCCTGACGACCCCTCTTGTACCCGGAGATTGCCCACATGTAC
AAGTCCGACAAGGCCCAATATGAATCCACG