BQ623832

Overview
NameBQ623832
Unique NameBQ623832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:39..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.878e-55
Identity = 96/118 (81.36%), Postives = 104/118 (88.14%), Query Frame = 3
Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSN SICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118          

HSP 2 Score: 24.2534 bits (51), Expect = 2.878e-55
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDRDKY 134          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.878e-55
Identity = 95/118 (80.51%), Postives = 105/118 (88.98%), Query Frame = 3
Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGP +SPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 118          

HSP 2 Score: 24.6386 bits (52), Expect = 2.878e-55
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  524 LYPEIAHMYKSDKAQY 571
            L PEIA +YK+D+ +Y
Sbjct:  119 LVPEIARIYKTDRERY 134          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.308e-55
Identity = 94/119 (78.99%), Postives = 106/119 (89.08%), Query Frame = 3
Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRI +EL+D+Q+ PP +CSAGPVAE D+FHWQATIMGP DSPY+GGVF V+I F  DYPFKPPKV F+TKV+HPNI+S GSICLDILKEQWSPA T SKVLLSICSLLTDPNP+DP
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDP 119          

HSP 2 Score: 34.2686 bits (77), Expect = 8.308e-55
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAH+YK DK++YEST
Sbjct:  120 LVPEIAHLYKVDKSKYEST 138          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.785e-53
Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 3
Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++HPN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDP
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDP 118          

HSP 2 Score: 25.7942 bits (55), Expect = 5.785e-53
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIA +YK+D+ +Y  T
Sbjct:  119 LVPEIAQIYKTDRDKYNRT 137          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.785e-53
Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 3
Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++HPN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDP
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDP 118          

HSP 2 Score: 25.7942 bits (55), Expect = 5.785e-53
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIA +YK+D+ +Y  T
Sbjct:  119 LVPEIAQIYKTDRDKYNRT 137          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.692e-42
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            ++KRI KEL ++  DPP +CSAGP  ++++ W +TI+GP  S Y GGVF + IHF P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 203          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.074e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 172          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.074e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 172          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.074e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 164          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.074e-41
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DP
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 164          
The following BLAST results are available for this feature:
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UB2D3_BOVIN2.878e-5581.36Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC2_CAEEL2.878e-5580.51Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC12_ARATH8.308e-5578.99Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
U2D2B_RAT5.785e-5377.97Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE5.785e-5377.97Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBCD2_DROME3.692e-4265.81Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E2_MOUSE1.074e-4165.81Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.074e-4165.81Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E1_MOUSE1.074e-4165.81Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN1.074e-4165.81Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00912 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00912 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623832 ID=BQ623832; Name=BQ623832; organism=Citrus sinensis; type=EST; length=580bp
GCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATC
TGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTC
TGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAA
TAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAG
GATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGA
AGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATAGCCCAT
ATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGATTATCCT
TTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACAT
CAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAGTC
CAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACT
GATCCAAATCCTGACGACCCCTCTTGTACCCGGAGATTGCCCACATGTAC
AAGTCCGACAAGGCCCAATATGAATCCACG
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