BQ623832

Overview
NameBQ623832
Unique NameBQ623832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:39..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.963e-28
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 524
            A +R++++ K LQ DPP   S  P+  ++  WQA I GP DS + G  F +++ F  +YP   P V F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P+
Sbjct:    5 ARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPA 122          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 524
            A +R++++ K +Q+DPP   SA PV++++  W A I+GP+D+P+  G F + + F   YP KPP V F + +FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P+
Sbjct:    5 ARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPA 122          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPN 509
            A +R++++ K +Q DPP   SA PV +++  W A I+GP+D+P+  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPN 117          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 51/118 (43.22%), Postives = 80/118 (67.80%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 524
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P+
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPA 122          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 55/118 (46.61%), Postives = 80/118 (67.80%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDP 521
            +S+R+ KE  DL++ P        V +++FHW  T +GPSDS YAGG F  ++ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDP
Sbjct:    8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDP 125          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.760e-28
Identity = 52/118 (44.07%), Postives = 79/118 (66.95%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 524
            A +R++++ K +Q DPP   SA PV +++  W A I+GP+D+P+  G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P+
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPA 122          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.760e-28
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  174 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            S+RI KEL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNP 122          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  177 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            +RI+KE + L ++P    +A P   +  ++   + GP+DSP+ GGVF + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDP
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDP 120          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.153e-27
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  174 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            +KRI+KE++ ++ DP    +   V+E D+ H + T +GP  +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 121          
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.506e-27
Identity = 50/118 (42.37%), Postives = 80/118 (67.80%), Query Frame = 3
Query:  171 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPS 524
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P+
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPA 122          
The following BLAST results are available for this feature:
BLAST of BQ623832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UBC2_DICDI3.963e-2846.61Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_SCHPO5.176e-2844.07Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_NEUCR5.176e-2846.02Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_CANGA5.176e-2843.22Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC14_SCHPO5.176e-2846.61Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC2_NECHA6.760e-2844.07Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC1_SCHPO6.760e-2847.86Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2N_DROME8.828e-2848.70Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC1_YEAST1.153e-2749.15Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC2_YEAST1.506e-2742.37Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00912 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00912 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623832 ID=BQ623832; Name=BQ623832; organism=Citrus sinensis; type=EST; length=580bp
GCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATC
TGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTC
TGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAA
TAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAG
GATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGA
AGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATAGCCCAT
ATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGATTATCCT
TTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACAT
CAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAGTC
CAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACT
GATCCAAATCCTGACGACCCCTCTTGTACCCGGAGATTGCCCACATGTAC
AAGTCCGACAAGGCCCAATATGAATCCACG
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