BQ623835

Overview
NameBQ623835
Unique NameBQ623835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623835_ssr13 microsatellite BQ623835_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2797 contig Csv1_Contig2797:136..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 60/176 (34.09%), Postives = 107/176 (60.80%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 628
            L   S  +GN  ++  + L+KL    S+ +  ++ D + F+ L  +G T+  +A+++ GR++P ++LE +   F+  YG   A  APA  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  +   +  FR    ++RR +W++N
Sbjct:   15 LAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 59/167 (35.33%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  131 GNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R    +FL  VK  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI 187          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  131 GNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 65/202 (32.18%), Postives = 105/202 (51.98%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPASNNKF-TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGST 709
            L   S  S N ++IA Q L+K+P + +   +Y+ D + F+    +G T   +ADE +GR+IP +FLE +   FV  YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N+      FR    +    +W +N                      CHG T
Sbjct:   15 LAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHGPT 214          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 58/167 (34.73%), Postives = 96/167 (57.49%), Query Frame = 2
Query:  131 GNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  VK  F + YG  +A TA    +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 58/167 (34.73%), Postives = 96/167 (57.49%), Query Frame = 2
Query:  131 GNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 58/167 (34.73%), Postives = 96/167 (57.49%), Query Frame = 2
Query:  131 GNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = 2
Query:  131 GNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            GNF  +  Q L K+P+ NNK TY    + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   23 GNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 61/176 (34.66%), Postives = 100/176 (56.82%), Query Frame = 2
Query:  101 LCLLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 628
            +CL+     +GNF  +A + + K+P ++ K  Y  + H F+Y+ +N   +  +  E  G QIP  FL  ++ +F+  YG   +  +P    +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L  ++  F+S    ++RK+W QN
Sbjct:   16 VCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
The following BLAST results are available for this feature:
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA714_ARATH4.259e-2634.09Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAMP7_MOUSE1.049e-2435.33Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK1.049e-2436.69Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VA712_ARATH1.789e-2432.18Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_RAT2.337e-2434.73Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN3.986e-2434.73Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN3.986e-2434.73Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB8.880e-2434.73Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI1.160e-2334.66Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00915 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00915 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623835 ID=BQ623835; Name=BQ623835; organism=Citrus sinensis; type=EST; length=712bp
AAACAAGCCCAGATCTCATCTCATCTCAACTCGACTCAATTAGTCTCATC
AAAATGAGCCAGAAATCGCTGATCTACGCCTTCGTGGCCGCGCGGAAATG
TTGTGCTTGCTGAGTACATCTGAGTTCAGTGGCAATTTCAACTCCATAGC
CTATCAGTGCCTCCAGAAACTCCCTGCTTCCAACAACAAGTTCACTTACA
ACTGTGATGCTCACACCTTCAATTATCTCGTCGATAATGGTTACACATAT
TGTGTGGTCGCAGATGAATCGTCCGGAAGACAAATACCGATGGCTTTTCT
GGAGCGCGTCAAGGATGAATTTGTTTCCAAATATGGGGGTGGAAAGGCTG
CCACGGCTCCTGCCAATGGCCTGAACAAGGAATTTGGACCAAAATTGAAA
GAACTTATGCAGTACTGTGTTGATCATCCTGAGGAGATCAGCAAGCTTGC
GAAGGTTAAGGCTCAGGTTTCAGAAGTCAAAGGTGTTATGATGGAGAATA
TTGAAAAGGTTTTAGATAGGGGGGAAAAGATTGAGCTACTGGTCGATAAG
ACTGAGAACCTTCATCAGCAGGCACAAGACTTTCGGAGTACGGGGACCAA
AATGCGGAGGAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTTT
TGGGAATACTGATTGCCTTGATCCTCATCATAGTCCTCTCTGTTTGCCAT
GGTTCAACTGCG
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