BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.134e-63
Identity = 117/181 (64.64%), Postives = 142/181 (78.45%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E ++F+G K AYALS+GL VIAC+GE L++REAG T +V   Q KA AD I SWDNVV+AYEPVWAIGTGKVA+P QAQEVHA LR W  +NVSA+V+  TRIIYGGSV+GSNC EL  +  +  F VGGASLK +
Sbjct:    1 IQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPE 181          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.481e-63
Identity = 119/189 (62.96%), Postives = 140/189 (74.07%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VK++L     +AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++ E  +F+G K AYAL++GL VIAC+GE L+EREAG T DV   Q KA AD + +W NVVIAYEPVWAIGTGKVA+P QAQEVH  LR WL  NVSADVA  TRIIYGGSVNG NC EL  +  +  F VGGASLK +
Sbjct:   52 VKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 2.793e-62
Identity = 120/191 (62.83%), Postives = 141/191 (73.82%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KDIG  WV+LGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK++VS  VA  TRIIYGGSV G NC ELA++  +  F VGGASLK +
Sbjct:   49 DFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 8.127e-62
Identity = 120/191 (62.83%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+ALSEGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   49 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.061e-61
Identity = 115/189 (60.85%), Postives = 139/189 (73.54%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VKN L     +AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E ++F+G K AYALS+GL VIAC+GE L++REAG T  V   Q KA A+ +  W N+V+AYEPVWAIGTGKVA+P QAQEVH  LR W+K NV ADVA   RIIYGGSVNG+N  ELA +  +  F VGGASLK +
Sbjct:   52 VKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.386e-61
Identity = 119/191 (62.30%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.386e-61
Identity = 119/191 (62.30%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.811e-61
Identity = 119/191 (62.30%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 1.811e-61
Identity = 119/191 (62.30%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 1.811e-61
Identity = 119/191 (62.30%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LACSA1.134e-6364.64Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ARATH1.481e-6362.96Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_CHICK2.793e-6262.83Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_RABIT8.127e-6262.83Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_COPJA1.061e-6160.85Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_MACMU1.386e-6162.30Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA1.386e-6162.30Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_PONAB1.811e-6162.30Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR1.811e-6162.30Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_HUMAN1.811e-6162.30Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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