BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 114/184 (61.96%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 114/184 (61.96%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIG (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittGG) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 90/182 (49.45%), Postives = 116/182 (63.74%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            I++ AQN  +   GAFTG+IS E LKD G K++++GHSERR    E D+F+ KK       GL  + CIGE   E EAGKT +VC +Q+ A  +A  + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  +  +    VGGASLKA
Sbjct:   68 IQLGAQNVDINVKGAFTGDISSEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKA 248
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 90/182 (49.45%), Postives = 116/182 (63.74%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            I++ AQN  +   GAFTG+IS E LKD G K++++GHSERR    E D+F+ KK       GL  + CIGE   E EAGKT +VC +Q+ A  +A  + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  +  +    VGGASLKA
Sbjct:   68 IQLGAQNVDINVKGAFTGDISSEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKA 248
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ESCF3 (Triosephosphate isomerase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ECOUT (Triosephosphate isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSM (Triosephosphate isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSE (Triosephosphate isomerase OS=Escherichia coli (strain SE11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLU (Triosephosphate isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLI (Triosephosphate isomerase OS=Escherichia coli (strain K12) GN=tpiA PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SALCH9.667e-3949.46Triosephosphate isomerase OS=Salmonella choleraesu... [more]
TPIS_SALA49.667e-3949.46Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_HAEIG9.667e-3949.45Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEI89.667e-3949.45Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_ESCF39.667e-3949.46Triosephosphate isomerase OS=Escherichia fergusoni... [more]
TPIS_ECOUT9.667e-3949.46Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSM9.667e-3949.46Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSE9.667e-3949.46Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLU9.667e-3949.46Triosephosphate isomerase OS=Escherichia coli O17:... [more]
TPIS_ECOLI9.667e-3949.46Triosephosphate isomerase OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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