BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ECO45 (Triosephosphate isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ECO24 (Triosephosphate isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SERP5 (Triosephosphate isomerase OS=Serratia proteamaculans (strain 568) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.263e-38
Identity = 94/195 (48.21%), Postives = 119/195 (61.03%), Query Frame = 2 
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            DQ K++L   RI + AQN  V   GAFTGE+S + LKDIG +++++GHSERR    E D  I +K A   + GL  + CIGE   E EAGKT +VC +Q+ A        ++   VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 DQAKHALAGSRIALGAQNVDVNLSGAFTGEVSADMLKDIGAQYIIIGHSERRTYHKETDAAIAEKFAVLKTAGLIPVLCIGETDAENEAGKTEEVCARQIDAVLKTQGAEAFKGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAAEVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.263e-38
Identity = 84/181 (46.41%), Postives = 116/181 (64.09%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            +E+ AQN +  + GAFTGE++   L D+GC++V+LGHSERR ++GE D  + KK   AL+  L  I C+GE L++REA  T  V   Q++   + +      N+VIAYEPVWAIGTGK A+ EQA+ VHA +R+ L    S +VA + RI YGGSV   N  EL ++  +    VGG+SLK
Sbjct:   60 VELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGETLEQREADDTESVIETQIRGSLEGLDEARAANIVIAYEPVWAIGTGKTASKEQAEAVHAFIRELLGKMFSTEVAEQIRIQYGGSVKPGNAEELLSQPNIDGALVGGSSLK 240
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YERPY (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 94/195 (48.21%), Postives = 118/195 (60.51%), Query Frame = 2 
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 NQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YERPS (Triosephosphate isomerase OS=Yersinia pseudotuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 94/195 (48.21%), Postives = 118/195 (60.51%), Query Frame = 2 
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 NQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YERPP (Triosephosphate isomerase OS=Yersinia pestis (strain Pestoides F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 94/195 (48.21%), Postives = 118/195 (60.51%), Query Frame = 2 
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 NQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YERPN (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 94/195 (48.21%), Postives = 118/195 (60.51%), Query Frame = 2 
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 NQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YERPG (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 94/195 (48.21%), Postives = 118/195 (60.51%), Query Frame = 2 
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 NQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YERPE (Triosephosphate isomerase OS=Yersinia pestis GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 94/195 (48.21%), Postives = 118/195 (60.51%), Query Frame = 2 
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 NQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ECO459.667e-3949.46Triosephosphate isomerase OS=Escherichia coli O45:... [more]
TPIS_ECO249.667e-3949.46Triosephosphate isomerase OS=Escherichia coli O139... [more]
TPIS_SERP51.263e-3848.21Triosephosphate isomerase OS=Serratia proteamacula... [more]
TPIS_RHOBA1.263e-3846.41Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_YERPY1.649e-3848.21Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPS1.649e-3848.21Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPP1.649e-3848.21Triosephosphate isomerase OS=Yersinia pestis (stra... [more]
TPIS_YERPN1.649e-3848.21Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPG1.649e-3848.21Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPE1.649e-3848.21Triosephosphate isomerase OS=Yersinia pestis GN=tp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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