BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP2 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.813e-38
Identity = 93/182 (51.10%), Postives = 115/182 (63.19%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            I + AQN  V   GAFTG+IS E LKD G K++++GHSERR    E D FI KK A   + GL  + CIGE   E EAG+T  VC +Q+ A  DA  + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  +  +    VGGASLKA
Sbjct:   61 IALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKA 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTR (Triosephosphate isomerase OS=Chlamydia trachomatis GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            I + AQ +     GAFTGEIS   LKDIG  +V++GHSERRH+  E +  + +KAA A+  G+  + CIGE L+E+E+G T D+   QL      +P   + ++AYEPVWAIGTGKVA P+  QE HA  R  + +  S D+A +T I+YGGSV   N   L+    +    VGGASL +++ L
Sbjct:   82 IFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTTGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFL 265          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_UNCTG (Triosephosphate isomerase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.798e-38
Identity = 90/194 (46.39%), Postives = 121/194 (62.37%), Query Frame = 2
Query:    5 QVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLK-AYAD-AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +V N +    I + AQN +    GAFTGEIS   ++D GC +V++GHSERR   GE D+ + KK   AL+  +  I C+GE L+ERE   TF V  +Q++   AD  +      VIAYEPVWAIGTGK ATP+QAQEVH+ +R  +   +  + A K RI+YGGSVN  N ++L  K  +    VGGASL+A+S
Sbjct:   49 EVNNEIKGSNINLGAQNLFGEAKGAFTGEISTAMIRDTGCSYVIVGHSERRQYFGETDEAVNKKTKAALAADITPIVCVGETLKERENNVTFSVIEKQVRNGLADLTLQQASLTVIAYEPVWAIGTGKTATPDQAQEVHSFIRK-IYAQMYEESAEKVRILYGGSVNPGNVSDLMKKSDIDGGLVGGASLEAES 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_THEP3 (Triosephosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.798e-38
Identity = 90/190 (47.37%), Postives = 114/190 (60.00%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGN 595
            I + AQ+ +  + GA+TGEIS   LK+IG K+VV+GHSERR   GE D+ + KK   ALS GL  I C+GE L +RE GKTF+V   Q K     +   D  NVVIAYEP+WAIGTGK AT + A EV  ALR+ + +    + A+  RI YGGSV   N +EL  +  +    VGGASL A       N
Sbjct:   58 ILLGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGESLSQREEGKTFEVVLNQTKEALKGVSHDDIVNVVIAYEPIWAIGTGKTATAKDANEVIKALRNTIASLYGKEKASLVRIQYGGSVKPENISELMAESDIDGALVGGASLVASDFAKIVN 247          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTB (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.798e-38
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            I + AQ +     GAFTGEIS   LKDIG  +V++GHSERRH+  E +  + +KAA A+  G+  + CIGE L+E+E+G T D+   QL      +P   + ++AYEPVWAIGTGKVA P+  QE HA  R  + +  S D+A +T I+YGGSV   N   L+    +    VGGASL +++ L
Sbjct:   82 IFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFL 265          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT2 (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.798e-38
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            I + AQ +     GAFTGEIS   LKDIG  +V++GHSERRH+  E +  + +KAA A+  G+  + CIGE L+E+E+G T D+   QL      +P   + ++AYEPVWAIGTGKVA P+  QE HA  R  + +  S D+A +T I+YGGSV   N   L+    +    VGGASL +++ L
Sbjct:   82 IFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFL 265          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 157.532 bits (397), Expect = 4.798e-38
Identity = 87/181 (48.07%), Postives = 115/181 (63.54%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKA--YADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            I++ AQN +    GAFTGEIS   L++IG ++V++GHSERR +  EDD+FI +K    L +G+  I C+GE L+ERE G TF V  +Q++   Y         VVIAYEPVWAIGTG+VATP+QAQEVHA +R  L      + A   RI+YGGS+   N   L  ++ +    VGGASLK
Sbjct:  459 IKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLK 639          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_GEOMG (Triosephosphate isomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.266e-38
Identity = 91/193 (47.15%), Postives = 118/193 (61.14%), Query Frame = 2
Query:    8 VKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            VK ++ D  I ++AQ+ +  + GAFTGEIS   L D GC  V++GHSERR   GE D+ + +K   A++ GL V+ CIGE L EREA KTF+V   Q++     +   D   +VIAYEPVWAIGTGK AT EQAQ  HA +R  +    +  +A   RI+YGGSV   N   L N+  +    VGGASLKA S
Sbjct:   50 VKRAIADCNIMLSAQDCFWEEEGAFTGEISPGMLVDAGCSHVIIGHSERRQYFGETDETVNRKIKAAITAGLTVLFCIGETLAEREADKTFEVLRTQIENGLAGLARGDLAKIVIAYEPVWAIGTGKTATDEQAQIAHAFIRKVVGELFTVQIAETIRILYGGSVKPENVRGLMNQPDIDGALVGGASLKADS 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.266e-38
Identity = 85/184 (46.20%), Postives = 112/184 (60.87%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            + AQN +    GAFTGE+S   L DIGC++V++GHSERR   GE D F+ +K   AL+ GL  I C+GE   +R+AG+   +   Q++A    +P     NVVIAYEP+WAIGTG  ATP  AQ +HAA+R  L     +++A   RI YGGSV   N  EL  +  +    VGGASL+A S L
Sbjct:   61 LGAQNLYPEAQGAFTGEVSPPMLVDIGCRYVIIGHSERRQYFGESDAFVNRKLRAALAHGLRPIVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSVKPDNIDELMAQPDIDGALVGGASLQAASFL 244          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.069e-37
Identity = 86/184 (46.74%), Postives = 110/184 (59.78%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            I +AAQN      GAFTGE+SV  L + GC +V++GHSERR   G+ +  +  K   ALS GL VI C+GE L ERE G T +V   Q+K   + +    ++VIAYEPVWAIGTGK A+  QAQEVHA++R  +    S   A   RI YGGSV  SN  EL     +    +GGASL A+  +
Sbjct:   60 IHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGASLNAEDFV 243          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACTP22.813e-3851.10Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_CHLTR3.674e-3844.57Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_UNCTG4.798e-3846.39Triosephosphate isomerase OS=Uncultured termite gr... [more]
TPIS_THEP34.798e-3847.37Triosephosphate isomerase OS=Thermoanaerobacter ps... [more]
TPIS_CHLTB4.798e-3844.57Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLT24.798e-3844.57Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
PGKT_THEMA4.798e-3848.07Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_GEOMG6.266e-3847.15Triosephosphate isomerase OS=Geobacter metalliredu... [more]
TPIS_CHLAA6.266e-3846.20Triosephosphate isomerase OS=Chloroflexus aurantia... [more]
TPIS_PROA21.069e-3746.74Triosephosphate isomerase OS=Prosthecochloris aest... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
back to top