BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6053 contig Csv1_Contig6053:371..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.365e-61
Identity = 119/191 (62.30%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 3.088e-61
Identity = 117/191 (61.26%), Postives = 140/191 (73.30%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD+G  WVVLGHSERRHV GE D+ IG+K ++AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NV+  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 3.088e-61
Identity = 118/191 (61.78%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD+G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA   RIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.268e-61
Identity = 118/191 (61.78%), Postives = 138/191 (72.25%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K   D +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK+NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 6.880e-61
Identity = 119/191 (62.30%), Postives = 139/191 (72.77%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEIS   +KD+G  WVVLGHSERRH+ GE D+ IG+K  +ALSEGLGVIACIGE+L EREAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK NVS  VA  TRIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 117/191 (61.26%), Postives = 136/191 (71.20%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  ++ L   I++AAQN +    GAFTGEIS   +KD G KWV+LGHSERRHV GE D+ IG+K A+AL  GLGVIACIGE+L EREAG T  V F Q K  AD +  W  VV+AYEPVWAIGTGK A+P+QAQEVH  LR WLK NVS  VA   RIIYGGSV G  C ELA+++ L  F VGGASLK +
Sbjct:   49 DYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.533e-60
Identity = 118/188 (62.77%), Postives = 137/188 (72.87%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE D+ I  K A+AL+EGL VIACIGE LQEREAG+T  VCF+Q KA AD +  W NVVIAYEPVWAIGTGK A+PEQAQEVHAALR W   NVSADV+   RI YGGSV  +NC ELA K  +  F VGGASLK +
Sbjct:   51 RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPE 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.614e-60
Identity = 116/191 (60.73%), Postives = 137/191 (71.73%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I ++AQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ALSEG+GVIACIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATPEQAQEVH  LR+W+K NVS  VA   RIIYGGSV G  C ELA +  +  F VGGASLK +
Sbjct:   49 DFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.824e-60
Identity = 116/191 (60.73%), Postives = 135/191 (70.68%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  ++ L  RI +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ L   LGVIACIGE+L+EREAG T DV F+Q K  AD +  W  VV+AYEPVWAIGTGK A+PEQAQEVH  LR WL+ NVS  VA   RIIYGGSV G NC ELA +  +  F VGGASLK +
Sbjct:   49 DYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.695e-59
Identity = 114/191 (59.69%), Postives = 134/191 (70.16%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +  ++AQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ALSE +GVI CIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATPEQAQEVH  LR+WLK NVS DVA   RIIYGGSV G  C EL  +  +  F VGGASLK +
Sbjct:   49 DFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGFLVGGASLKPE 239          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CANFA2.365e-6162.30Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_MOUSE3.088e-6161.26Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_BOVIN3.088e-6161.78Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_GORGO5.268e-6161.78Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_RAT6.880e-6162.30Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPISB_DANRE8.986e-6161.26Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_CULTA1.533e-6062.77Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_XENLA2.614e-6060.73Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPISA_DANRE5.824e-6060.73Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_XENTR1.695e-5959.69Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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