BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6053 contig Csv1_Contig6053:371..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 228.409 bits (581), Expect = 2.213e-59
Identity = 115/191 (60.21%), Postives = 137/191 (71.73%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  L  +I +AAQN +    GAFTGEI    +KD+G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W+ VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK +V   VA  TRIIYGGSV G+ C ELA++  +  F V GASLK +
Sbjct:   50 DFARQKLDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.440e-59
Identity = 112/192 (58.33%), Postives = 141/192 (73.44%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHV--IGEDDQFIGKKAAYALSEG-LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            D  + +L    + +AQN+W+ KGGAFTGE+    +KD+G +WV+LGHSERRH+  + E D  I  KAAYAL    LGVI CIGE L+ERE+G+T  VC +QL+A +DAI  W +VVIAYEPVWAIGTGKVATPEQA++VH A+R WL NNVS  VA  TRI+YGGSV+ +NC  LA +  +  F VGGAS+K
Sbjct:   41 DSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMK 232          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.098e-58
Identity = 111/182 (60.99%), Postives = 133/182 (73.08%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS---WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            I+IAA+N +    GAFTGEIS E +KD GC+WV+LGHSERRH+ GE ++ IG+K  +AL  GL VI CIGE L EREAGKT DVCF Q+ A A  +PS   WD VVIAYEPVWAIGTGK ATP QAQEVH  +RDW++ +V A +A K RI+YGGSV  SN  +L  +  +  F VGGASLK
Sbjct:   58 IKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFLVGGASLK 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.435e-58
Identity = 111/191 (58.12%), Postives = 137/191 (71.73%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  ++ L  RI +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE+D+ IG+K A+AL   L VIACIGE+L+EREAG T DV F Q +  A+ +  W+ VV+AYEPVWAIGTGK ATPEQAQEVH  LR W + N+S +V+   RIIYGGSV  +NC ELA++  +  F VGGASLK +
Sbjct:   49 DFARSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.874e-58
Identity = 111/190 (58.42%), Postives = 138/190 (72.63%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI-PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VK  + D +E+AAQN W    GAFTGEIS   +KD+G  WV+LGHSERR + GE D+ + +K A+AL  GL VIACIGE L+ERE+GKT +V F+QLKA   AI   W+N+V+AYEPVWAIGTGK ATP+QAQ+VH ALR+WL  NVS  V+   RI YGGSV  +N  ELA+ + +  F VGGASLK +
Sbjct:   50 VKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.174e-58
Identity = 113/193 (58.55%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    5 QVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS---WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            +++ SL   I +AAQN +    GAFTGEIS   ++DIGC WV+LGHSERR++ GE D+ I +K  +AL+EGL VIACIGE L ERE+ KT +VC +QLKA A+ I S   W  VV+AYEPVWAIGTGKVATP+QAQEVH  LR W K N    V  K RIIYGGSV  +NC ELA +  +  F VGGASLK +
Sbjct:   51 EIRKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPE 243          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.586e-57
Identity = 109/172 (63.37%), Postives = 127/172 (73.84%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANK 526
            ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE D+ I  K A+AL+EGL VIACIGE LQEREAG+T  VCF+Q KA AD +  W NVV+AYEPVWAIGTGK ATPEQAQEVH ALR W  +NVSADV+   RI YGGSV  +NC ELA K
Sbjct:   33 RSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAK 204          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.706e-57
Identity = 111/172 (64.53%), Postives = 127/172 (73.84%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANK 526
            ++ L + I +AAQN +    GAFTGEIS   LKD+G  WV+LGHSERR + GE D+ I +K A+AL EGL VIACIGE LQEREAG+T  VCF+Q KA A  +  W NVVIAYEPVWAIGTGK ATPEQAQEVHAALR W   NVSADV+   RI YGGSV  +NC ELA K
Sbjct:   33 RSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGK 204          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.615e-57
Identity = 109/191 (57.07%), Postives = 135/191 (70.68%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D  +  +  +  +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K ++ALSEGLGV+ACIGE+L EREAG T  V F+  +  AD +  W  VV+AYEPVWAIGTGK A+P+Q+QE+H  LR WLK NVS  VA   RIIYGGSV G+ C ELA++  +  F VGGASLK +
Sbjct:   48 DFARLKVDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPE 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.615e-57
Identity = 112/188 (59.57%), Postives = 135/188 (71.81%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            +N L   + +A QN++    GAFTGEIS   LKDIG  WV+LGHSERR + GE D  I +KA +AL+EGL VIACIGE L+EREAGKT +V  +Q+ AYA  I  W NVV+AYEPVWAIGTGK ATP+QAQEVHA LR WL +N+S +V+   RI YGGSV  +N  ELA K  +  F VGGASLK +
Sbjct:   51 RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPE 238          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PIG2.213e-5960.21Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_GRAVE6.440e-5958.33Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_TAESO1.098e-5860.99Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_ORYLA1.435e-5858.12Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_BOMMO1.874e-5858.42Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_SCHMA4.174e-5858.55Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_AEDTO1.586e-5763.37Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_ANOME2.706e-5764.53Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_LATCH4.615e-5757.07Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_DROYA4.615e-5759.57Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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