BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6053 contig Csv1_Contig6053:371..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.615e-57
Identity = 112/188 (59.57%), Postives = 135/188 (71.81%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            +N L   + +A QN++    GAFTGEIS   LKDIG  WV+LGHSERR + GE D  I +KA +AL+EGL VIACIGE L+EREAGKT +V  +Q+ AYA  I  W NVV+AYEPVWAIGTGK ATP+QAQEVHA LR WL +N+S +V+   RI YGGSV  +N  ELA K  +  F VGGASLK +
Sbjct:   51 RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPE 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.343e-56
Identity = 109/194 (56.19%), Postives = 136/194 (70.10%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS---WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            ++V+ SL   I +AAQN +    GAFTGEIS   +KD+GC WV+LGHSERR +  E D+ + +K  +AL+EGL V+ACIGE L ERE+GKT +VC +QL A A+ I S   W  VV+AYEPVWAIGTGKVA+P QAQEVH  LR W K N  + V  + RIIYGGSV  +NC ELA +  +  F VGGASLK +
Sbjct:   50 NEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPE 243          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.343e-56
Identity = 111/188 (59.04%), Postives = 135/188 (71.81%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            +N L   + +A QN++    GAFTGEIS   LKDIG  WV+LGHSERR + GE D  I +KA +AL+EGL VIACIGE L+EREAGKT +V  +Q+ AYA  I  W NVV+AYEPVWAIGTG+ ATP+QAQEVHA LR WL +N+S +V+   RI YGGSV  +N  ELA K  +  F VGGASLK +
Sbjct:   51 RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPE 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.290e-56
Identity = 109/172 (63.37%), Postives = 125/172 (72.67%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANK 526
            ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE  + I  K  +AL+EGL VIACIGE LQEREA KT  VCF+Q KA AD +  W NVVIAYEPVWAIGTGK ATPEQAQEVHAALR W   NVSADV++  RI YGGSV  +NC ELA K
Sbjct:   33 RSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAK 204          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.664e-56
Identity = 112/192 (58.33%), Postives = 133/192 (69.27%), Query Frame = 2
Query:    2 DQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            D VK +L    +E+AAQN +    GAFTGEIS  QL D+G KWV+LGHSERR+ +GE D+FI  K  YAL  G+ VI C GE    R+AG+T      QL A A  I  W NVVIAYEP+WAIGTG VAT EQAQEVHAA+R WLK NVS  VA +TRI+YGGSVN  NC +LA ++ +  F VGGASLK +
Sbjct:   48 DFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 6.237e-54
Identity = 109/186 (58.60%), Postives = 131/186 (70.43%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            K+ L   + +AAQN +    GAFTGEIS   +KD+G +WV+LGHSERRHV GE D  I +K  +AL  G+ V+ CIGE+L+EREAG T DV F+QL+A  D   SW+N+VIAYEPVWAIGTGK A+ EQAQEVH  +R +LK  VS  VA  TRIIYGGSV   N AEL  K  +  F VGGASLK
Sbjct:   51 KSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLK 236          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.815e-53
Identity = 101/192 (52.60%), Postives = 136/192 (70.83%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNSRN 604
            ++ + AQN+++   GAFTGE SV+Q+KD+G KWV+LGHSERR    EDD+FI  K  +AL +G+GVI CIGE L+E++AGKT DV  +QL A  + +  W NVV+AYEPVWAIGTG  ATPE AQ++HA++R +L + +    A++ RI+YGGS NGSN     +K  +  F VGGASLK +  +   NSRN
Sbjct:   58 QVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE-FVDIINSRN 248          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 101/181 (55.80%), Postives = 125/181 (69.06%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            IE++AQN +    GA+TGEIS EQ+KD+G  W + GHSERR +I E D FI  K  +AL +GL VI CIGE L+ER+A  T DVC +QL A A  +  W  +V+AYEPVWAIGTG  ATPE AQE H A+R+ L  ++ AD A KTRI+YGGSVNG N  E  +K  +  F VGGASLK +
Sbjct:   59 IEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNAPEFKDKADVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53
Identity = 98/182 (53.85%), Postives = 129/182 (70.88%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            ++ + AQN+++   GAFTGE SV+Q+KD+G KWV+LGHSERR    EDDQ I +K A+ALS+G+GVI CIGE L +++AG T  V  +QL+A  D +  W NVVIAYEPVWAIGTG  ATPE AQE+H ++R++L   +    A +TRI+YGGS NG N     +K  +  F VGGASLK +
Sbjct:   58 QVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.006e-52
Identity = 102/172 (59.30%), Postives = 125/172 (72.67%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI-PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELA 520
            V++ +   I +AAQN W    GAFTGEIS   +KDIG  WV+LGHSERR + GE D  + +K A+AL  GL VIACIGE L+EREAGKT +V F+Q KA   AI  +W NVV+AYEPVWAIGTGK A+P+QAQ+VHA+LR+WL +N S DVA   RI YGGSV  +N  EL+
Sbjct:   38 VQSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELS 209          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DROSI4.615e-5759.57Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_SCHJA1.343e-5656.19Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_DROME1.343e-5659.04Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_CULPI2.290e-5663.37Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_NEUCR6.664e-5658.33Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_CAEEL6.237e-5458.60Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_YEAST1.815e-5352.60Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_DEBHA2.370e-5355.80Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_ZYGBA6.896e-5353.85Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_HELVI2.006e-5259.30Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
back to top