BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BLOPB (Triosephosphate isomerase OS=Blochmannia pennsylvanicus (strain BPEN) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 76/188 (40.43%), Postives = 110/188 (58.51%), Query Frame = 2 
Query:   20 LTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            L  RI++ AQN  +   G+FTG+IS E L+D+  ++ ++GHSERR    E+D +I KK       GL  I C+GE  +E ++G T  VC  Q+        I ++ N VIAYEP+WAIG+G  A+PE AQ VH ++RD++  +    +A K  I YGGSV   N  +  +++ +    VG ASL A S
Sbjct:   55 LNSRIQLCAQNVDIHLSGSFTGDISAEMLQDLNVRYALIGHSERRIHHKENDAYIAKKFFILKKVGLIPILCVGENKREYDSGYTQSVCINQINTIITLLGIEAFKNSVIAYEPIWAIGSGASASPENAQLVHKSIRDYIA-SYDTSIADKITIQYGGSVTPENVTKFFDQKDIDGVLVGAASLNANS 241
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 79/186 (42.47%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AAQN +    GAFTGE S + LK+IG  +VV+GHSERR    E D+ I KKA    + G+  I C GE L+  EAGK  +    Q+ A    + +    + VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A       +    VGGASL+A+S L
Sbjct:   60 LKVAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVASTVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFL 245
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_STREM (Triosephosphate isomerase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 79/186 (42.47%), Postives = 108/186 (58.06%), Query Frame = 2 
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AAQN +    GA+TGE S + L D+G  +VV+GHSERR    E D+ I KKA    + GL  I C GE L+  EAG+       Q+ A  + + +    ++V+AYEP+WAIGTGK AT E AQ +  A+RD +  +   +VA K R+ YGGSV   N  E      +    VGGASL+A S L
Sbjct:   60 LKVAAQNCYFENSGAYTGETSPKVLADMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIICCGESLETYEAGQAVAFVGAQVSAALEGLSAEQVASLVLAYEPIWAIGTGKSATQEDAQSMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENIKEYMACPDVDGALVGGASLEADSFL 245
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 71/182 (39.01%), Postives = 109/182 (59.89%), Query Frame = 2 
Query:   44 AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            AQN +    GA+TGE+S   L D+G +  ++GHSERR +  E D+ + +KA  A+  GL  + C+GE  +ER+AG+ ++    Q++A  + +   S   VV AYEP+WAIGTGK A+PE AQ+    +R  L+       A + R++YGGS+   N +E+  ++ +    VGGASL+  S L
Sbjct:   67 AQNFFYEDSGAYTGEVSAPMLLDVGARASIVGHSERRELFCETDESVARKARRAVEAGLLPVVCVGETEEERDAGRMWEKVSGQVRAVVEGLGDASGGRVVFAYEPIWAIGTGKTASPEDAQDAIGRIRGLLRELRGEGFAEEARLLYGGSIKPENISEIMAQKDVDGGLVGGASLEVGSFL 248
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCUA (Triosephosphate isomerase OS=Mycobacterium ulcerans (strain Agy99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 82/184 (44.57%), Postives = 103/184 (55.98%), Query Frame = 2 
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            R+    Q+      GA+TG+IS   L  +GC +VV+GHSERR    EDD  +  KAA AL   L  I CIGE L  REAG       +QL+     + +     VVIAYEPVWAIGTG+VA    AQEV AA+R  L +  S  +A   R++YGGSVN  N  EL  +  +    VGGASL  +
Sbjct:   63 RLTYGGQDLSQHDSGAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISKVVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADVDGGLVGGASLDGE 246
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSS (Triosephosphate isomerase OS=Mycobacterium sp. (strain MCS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 81/184 (44.02%), Postives = 103/184 (55.98%), Query Frame = 2 
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            R+   AQ+      GA+TGEIS   L  +GC + V+GHSERR    EDD  +  KAA A   G+  I CIGE L+ REAG   +   +QL+     + S      VIAYEPVWAIGTG+VA    AQEV  A+RD L    S  +A   R++YGGSVN  N  E+  +  +    VGGASL  +
Sbjct:   63 RLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 81/184 (44.02%), Postives = 103/184 (55.98%), Query Frame = 2 
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            R+   AQ+      GA+TGEIS   L  +GC + V+GHSERR    EDD  +  KAA A   G+  I CIGE L+ REAG   +   +QL+     + S      VIAYEPVWAIGTG+VA    AQEV  A+RD L    S  +A   R++YGGSVN  N  E+  +  +    VGGASL  +
Sbjct:   63 RLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 81/184 (44.02%), Postives = 103/184 (55.98%), Query Frame = 2 
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            R+   AQ+      GA+TGEIS   L  +GC + V+GHSERR    EDD  +  KAA A   G+  I CIGE L+ REAG   +   +QL+     + S      VIAYEPVWAIGTG+VA    AQEV  A+RD L    S  +A   R++YGGSVN  N  E+  +  +    VGGASL  +
Sbjct:   63 RLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMM (Triosephosphate isomerase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 82/184 (44.57%), Postives = 103/184 (55.98%), Query Frame = 2 
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            R+    Q+      GA+TG+IS   L  +GC +VV+GHSERR    EDD  +  KAA AL   L  I CIGE L  REAG       +QL+     + +     VVIAYEPVWAIGTG+VA    AQEV AA+R  L +  S  +A   R++YGGSVN  N  EL  +  +    VGGASL  +
Sbjct:   63 RLTYGGQDLSQHDSGAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISKVVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADVDGGLVGGASLDGE 246
[Close]
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBP (Triosephosphate isomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 80/184 (43.48%), Postives = 105/184 (57.07%), Query Frame = 2 
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            R+   AQ+      GA+TG++S   L  +GC +VV+GHSERR    EDD  +  KAA AL  GL  I CIGE L  REAG       +QL+     +      +VV AYEPVWAIGTG+VA+   AQEV AA+R  L +  S  +A   R++YGGSVN  N  ++  +  +    VGGASL  +
Sbjct:   63 RLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVTAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGE 246
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BLOPB1.495e-3140.43Triosephosphate isomerase OS=Blochmannia pennsylva... [more]
TPIS_STRGC1.952e-3142.47Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_STREM1.952e-3142.47Triosephosphate isomerase OS=Streptococcus equi su... [more]
TPIS_RUBXD1.952e-3139.01Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]
TPIS_MYCUA1.952e-3144.57Triosephosphate isomerase OS=Mycobacterium ulceran... [more]
TPIS_MYCSS1.952e-3144.02Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSK1.952e-3144.02Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ1.952e-3144.02Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCMM1.952e-3144.57Triosephosphate isomerase OS=Mycobacterium marinum... [more]
TPIS_MYCBP1.952e-3143.48Triosephosphate isomerase OS=Mycobacterium bovis (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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