BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BACME (Triosephosphate isomerase OS=Bacillus megaterium GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 82/186 (44.09%), Postives = 105/186 (56.45%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQL-KAYADAIPSW-DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            ++I AQN    + GAFTGE+S   L D+G  +V+LGHSERR +  E D+ + +K   A   GL  I C GE  +E E  +T  V   Q+ KA A          VIAYEP+WAIGTGK +T E A EV A +R  +    S DVA   RI YGGSV  +N  E  ++  +    VGGASL+A S L
Sbjct:   59 LKIGAQNMHFEENGAFTGEVSPVALADLGVNYVILGHSERREMFAETDETVNQKTIAAFKHGLTPIVCCGETNEEYEQDQTKTVVANQVQKALAGLTDEQVKQTVIAYEPIWAIGTGKSSTAEGANEVCAYIRSVVAEQFSQDVADAVRIQYGGSVKPANIKEYMSQSDIDGALVGGASLEADSFL 244          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 81/185 (43.78%), Postives = 102/185 (55.14%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLP 586
            I I  Q+      GA TG++S + L+D G  +V++GHSERR   GE D  +  K   A + GL  + CIGE L+EREAG T +V   QL        + +N V+AYEPVWAIGTGKV T +Q  EVH ALR  L     A       ++YGGSV   N AE+     +    VGGASLKA    P
Sbjct:   55 IAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTAENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVARFGA-AGKDLPLLYGGSVKPGNAAEIFGVSNVDGALVGGASLKAADFGP 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 76/185 (41.08%), Postives = 107/185 (57.84%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFD-VCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            + + AQ+      GA+TGE+    LK++GC++V++GHSERR +  E D+ +  KA  AL  G+  + C+GE   ER +G+  + VC Q  K  +       + +IAYEPVWAIGTGKVA+ + AQ++H A+R  L      DVA+   I+YGGSV   N  EL     +    VGGASL  Q  L
Sbjct:   64 LSLGAQDVSAHGAGAYTGEVGASMLKEMGCEYVIVGHSERRQMHQEADESVAAKALQALDSGMTPVICVGETADERNSGRAEEIVCSQVAKQVSVLQDRLADCLIAYEPVWAIGTGKVASAQVAQDMHRAIRMQLA-EFDEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLNPQDFL 247          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 84/201 (41.79%), Postives = 113/201 (56.22%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVN-GSNCAELANKRILMVFWVGGASLKAQSLLPFGN 595
            ++VK S    I++ AQN    + GA+TGEI+ + L+++G  +V++GHSERR    E D+ + KK   A    L  I C GE L+ERE   T  V   Q+K     +     + +VIAYEP+WAIGTGK AT EQA E    +R  +K      VA K RI YGGSV  G+  A++A + I     VGGASLKA+      N
Sbjct:   51 EEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGSVKPGTIKAQMAKEEIDGAL-VGGASLKAEDFAAIVN 247          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BIFAA (Triosephosphate isomerase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 72/186 (38.71%), Postives = 104/186 (55.91%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSL 580
            +I   AQ   V   GAFTG++S + +  +GC +V++GHSERR    EDD  I  +    L+ G+  I C+GE  +ER  G   D    Q+      +   +   +++AYEPVWAIGTG VATP+ AQ+   A+R+ L +     V    RI+YGGSV+  N  EL N+  +  F +GG++LK   L
Sbjct:   67 KIRYGAQAVSVTSQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESYEERRKGIELDFAVGQVHDVTRDLSDEEAAKLIVAYEPVWAIGTGMVATPQSAQDAARAIRNDLSDTFGTRVGETVRILYGGSVSSKNAVELINEPDVDGFLIGGSALKVDEL 252          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_XANC5 (Triosephosphate isomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 78/196 (39.80%), Postives = 111/196 (56.63%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            D +++     +   AQ+    + GA+TGE+S   L D+G  + ++GHSERR    E  + + +K A A+  GL  + C+GE L++REAG+T  +   QL      + S  +   V+AYEP+WAIGTG+ ATPEQAQ VHA LR  +     A +A    I+YGGSV   N  EL  +  +    VGGASL A+  L
Sbjct:   48 DLIEDFEAHHLSFGAQDVSSNEKGAYTGEVSASMLVDVGAGYGLVGHSERRQYHHESSELVARKFAAAIHAGLIPVLCVGESLEQREAGQTEAILRAQLDPVLALVGSAGFAGAVLAYEPIWAIGTGRTATPEQAQAVHAFLRGEVA-KADARIADSLPILYGGSVKPDNAGELFAQPDVDGGLVGGASLVAEDFL 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 79/186 (42.47%), Postives = 108/186 (58.06%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV--VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AAQN +    GAFTGE S + LK+IG  +VV+GHSERR    E D+ I KKA    + G+  I C GE L+  EAGK  +    Q+ A    + +      VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A       +    VGGASL+A+S L
Sbjct:   60 LKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_STRPZ (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 78/186 (41.94%), Postives = 108/186 (58.06%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA    + GL  I C GE L+  EAGK  +    Q+ A    + +    ++V+AYEP+WAIGTGK AT + AQ +  A+RD +  +   +VA K R+ YGGSV   N  +      +    VGGASL+A S L
Sbjct:   60 LKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEADSFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 79/186 (42.47%), Postives = 108/186 (58.06%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV--VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AAQN +    GAFTGE S + LK+IG  +VV+GHSERR    E D+ I KKA    + G+  I C GE L+  EAGK  +    Q+ A    + +      VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A       +    VGGASL+A+S L
Sbjct:   60 LKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAASVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_STRPM (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M28 GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 78/186 (41.94%), Postives = 108/186 (58.06%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA    + GL  I C GE L+  EAGK  +    Q+ A    + +    ++V+AYEP+WAIGTGK AT + AQ +  A+RD +  +   +VA K R+ YGGSV   N  +      +    VGGASL+A S L
Sbjct:   60 LKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEADSFL 245          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACME3.330e-3144.09Triosephosphate isomerase OS=Bacillus megaterium G... [more]
TPIS_SILST4.350e-3143.78Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_POLSQ4.350e-3141.08Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_CLOB14.350e-3141.79Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_BIFAA4.350e-3138.71Triosephosphate isomerase OS=Bifidobacterium adole... [more]
TPIS_XANC55.681e-3139.80Triosephosphate isomerase OS=Xanthomonas campestri... [more]
TPIS_STRR65.681e-3142.47Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPZ5.681e-3141.94Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPN5.681e-3142.47Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPM5.681e-3141.94Triosephosphate isomerase OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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