BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SULNB (Triosephosphate isomerase OS=Sulfurovum sp. (strain NBC37-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 72/180 (40.00%), Postives = 105/180 (58.33%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I AQN+++ K GAFTGEI ++QL +   K +++GHSERR ++GED  F+ +K +Y  S+G  +I CIGE L+ REAG+   V    L  +     S++ +++AYEP+WAIGTG  AT E     HAAL+                ++YGGSV  +N  E+     +    VG ASL+ +S
Sbjct:   54 IGAQNAYLEKNGAFTGEIGLDQLDEFAIKTILIGHSERRDILGEDQAFVAEKFSYFKSQGFEIIYCIGEALEVREAGEE-AVMVHLLSQFEGIDLSYEKMIVAYEPIWAIGTGHSATTEAIASTHAALKQHFDR----------PLLYGGSVKPANIKEITAIESVDGVLVGSASLEVES 222          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 80/191 (41.88%), Postives = 107/191 (56.02%), Query Frame = 2
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASL 565
            D VK ++    I++AAQN    + GAFTGE++   L+ +G  +VVLGHSERR    E D+ + KK   A    +  I C GE L++RE G T  V   Q+KA    + +   + +VIAYEP+WAIGTGK AT EQA E   A+R  +     ++ A KTRI YGGSV  +          +    VGGASL
Sbjct:   47 DAVKKAVAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIDYVVLGHSERREYFNETDEALNKKVKKAFEHNITPILCCGESLEQRENGTTNKVIEAQIKADIAGLTNEQVEKLVIAYEPIWAIGTGKTATDEQANETIKAIRAMVAEMYGSESAEKTRIQYGGSVKPNTIKAQMEMSDIDGALVGGASL 237          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BARHE (Triosephosphate isomerase OS=Bartonella henselae GN=tpiA PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 74/186 (39.78%), Postives = 102/186 (54.84%), Query Frame = 2
Query:   26 DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            + I +  QN      G +TG+IS   LK+ G   V++GHSERR V  E D  +  K   A   GL  + C+GE L+ER++ K  DV  +QL+       + +N++IAYEPVWA+GTG  AT     EVHA +   + +    D   K R++YGGSV  SN  EL +   +    +GGASLKA   L
Sbjct:   61 ENILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRF-GDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLKAIDFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LEIXX (Triosephosphate isomerase OS=Leifsonia xyli subsp. xyli GN=tpiA PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.653e-30
Identity = 76/182 (41.76%), Postives = 107/182 (58.79%), Query Frame = 2
Query:   26 DRIEIAAQNSWVGK--GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASL 565
            D++ IA     V +   GA+TGEI+   L  +  ++V++GHSERR +  E D+ +  K A A+  G+  I C+GE  ++ E      V   QL+A    I S  + V+AYEPVWAIG+G+ ATPEQA++V AALR  +   +  +VA KTRI+YGGSV   N A    +  +    VGGASL
Sbjct:   62 DKLPIAFGGQDVSEHDSGAYTGEIAASFLAALEARYVIIGHSERRTLHNETDEQVAAKTAQAVKNGISPIVCVGETAEDLEKHGASAVPVAQLRAALAGIDSAADFVVAYEPVWAIGSGQAATPEQAEQVAAALRAVIAEALGDEVAAKTRILYGGSVKSGNIAGFMRETNVDGALVGGASL 243          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30
Identity = 77/182 (42.31%), Postives = 98/182 (53.85%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            + AQ+      GA TG++S E L D G   +++GHSERR   GE D  +  KA  A   G   I C+GE   ER+AG+T DV  +QL        + +N V+AYEPVWAIGTG   T    ++VH  +RD L      + A   RI+YGGSV  SN  EL     +    VGGASLKA   L
Sbjct:   66 VGAQDCHANVSGAHTGDLSAEMLVDAGASAIIVGHSERRADHGETDSVVRAKAEAAWRAGAVAIVCVGETQAERDAGQTLDVVGRQLAGSLPDGATAENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCLTKRFGGEGAA-VRILYGGSVKPSNAKELMAVPEVNGALVGGASLKAADFL 246          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCCT (Triosephosphate isomerase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 82/194 (42.27%), Postives = 103/194 (53.09%), Query Frame = 2
Query:   20 LTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV--VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGN 595
            L   ++IAAQN      GA+TGEISV  LK+IG ++V++GHSERR +  E D  I KKA   L   +  I C GE L+ +E GKT +    Q+      I   D +  +IAYEP+WAIGTGK A    A+EV   +R+ L        A K  I YGGSV  SN  E      +    VGGASL A   L   N
Sbjct:   52 LAKNVKIAAQNVHFELKGAYTGEISVSMLKEIGVEYVIIGHSERREMFFETDLDINKKAKILLENNMIPIICCGESLETKEQGKTIEFVNNQINLIYQNISKQDAIKTIIAYEPIWAIGTGKTANSLDAEEVCKKIRENLAKIYDNLTAEKITIQYGGSVKPSNIQEYLKMPNIDGALVGGASLLANDYLGLVN 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 77/185 (41.62%), Postives = 103/185 (55.68%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLK-AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            IE+ AQ+  + + GA TG++S E L + G  WV+LGHSERR   GE  + + +K   A   GL  I C+GE   ER +G+  ++   Q+K +  D   +  N VIAYEPVWAIGTG+ AT E    +HA +R+ L      +     RI+YGGSV   N A L     +    VGGASL AQ  L
Sbjct:   59 IEVGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGETEDERASGRETEIVGWQIKGSLPDGFAADSNGVIAYEPVWAIGTGRTATVEDVAMMHAFIREELVRQF-GEAGRGVRILYGGSVKPENAASLLRVPEVGGALVGGASLSAQDFL 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 75/187 (40.11%), Postives = 103/187 (55.08%), Query Frame = 2
Query:   23 TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            T  + + AQ+      GA TG++S E L D G   +++GHSERR   GE D  + +K       GL  I C+GE  Q+R+AG+T D+   QL        +  N+ +AYEPVWAIGTG   T +  +++HA +R  L    + + A + RI+YGGSV  SN AEL     +    VGGASLKA   L
Sbjct:   60 TRAVAVGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGEGA-RMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BART1 (Triosephosphate isomerase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 76/182 (41.76%), Postives = 101/182 (55.49%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +  QN      G +TG+IS   LK+ G   V++GHSERR V  E+D  +  K   A   GL  + CIGE L+ER+  K  DV  QQL+       + +N +IAYEPVWAIGTG  AT E   +VH  +RD + +    D   K R++YGGSV  S+  EL +   +    +GGASLKA   L
Sbjct:   65 LGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQENDAIVCAKVQAAWHAGLVALVCIGETLEERDNNKVMDVLAQQLEGSLPDDTTAENTIIAYEPVWAIGTGNTATSEDIAKVHYFIRDKICSRF-GDEGNKIRLLYGGSVKPSSAFELLSIPHVNGALIGGASLKAIDFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_XANP2 (Triosephosphate isomerase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 77/184 (41.85%), Postives = 100/184 (54.35%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++  QN      GA TG IS E LKD G   V++GHSERR  + E D  +  K   A   GL  I C+GE  +ER+AG+   V  +Q+        +  N+VIAYEPVWAIGTG+  TPE    +H  +R  L++   A+ A   RI+YGGSV   N A L     +    VGGASLKA   L
Sbjct:   63 VQLGGQNCHPAPAGAHTGGISAEMLKDAGVTSVIVGHSERRTNLSESDAVVMAKVKAAWCFGLLPIVCVGETAEERDAGEAVGVVTRQVHQSLPEGCTASNLVIAYEPVWAIGTGRTPTPEDVANIHGTIRSVLRSQFGAE-ADGIRILYGGSVKPDNAATLMAVADVDGALVGGASLKAADFL 245          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SULNB1.266e-3040.00Triosephosphate isomerase OS=Sulfurovum sp. (strai... [more]
TPIS_CLOB81.266e-3041.88Triosephosphate isomerase OS=Clostridium beijerinc... [more]
TPIS_BARHE1.266e-3039.78Triosephosphate isomerase OS=Bartonella henselae G... [more]
TPIS_LEIXX1.653e-3041.76Triosephosphate isomerase OS=Leifsonia xyli subsp.... [more]
TPIS_RHOP52.159e-3042.31Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_MYCCT2.819e-3042.27Triosephosphate isomerase OS=Mycoplasma capricolum... [more]
TPIS_GRABC2.819e-3041.62Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS_BRASB2.819e-3040.11Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_BART12.819e-3041.76Triosephosphate isomerase OS=Bartonella tribocorum... [more]
TPIS_XANP23.682e-3041.85Triosephosphate isomerase OS=Xanthobacter autotrop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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