BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 76/188 (40.43%), Postives = 105/188 (55.85%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPF 589
            +++ AQN +    GAFTGE+S + L  +G K V+LGHSERR   GE DQ +  K   AL   L    C+GE L  +E  +T     QQL      +P  +  N++IAYEPVWAIGTGK ATP+ A +V   +RD +    S+  +   RIIYGGSV+ +N   +  +  +     G ASL+ +  L F
Sbjct:   62 LQVGAQNMFYESEGAFTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQPAIDGILAGKASLQTEDFLFF 249          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LACLS (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AA+NS+    GAFTGE S   + D+G +++++GHSERR    E D+ I KKA    + G   I C GE L+  EAGKT +    Q++A    + +    N+VIAYEP+WAIGTGK AT E A E    +R  ++     +V+   RI YGGSV       L  K  +    VGGASL+A S L
Sbjct:   60 LKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQVSNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEADSFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AA+NS+    GAFTGE S   + D+G +++++GHSERR    E D+ I KKA    + G   I C GE L+  EAGKT +    Q++A    + +    N+VIAYEP+WAIGTGK AT E A E    +R  ++     +V+   RI YGGSV       L  K  +    VGGASL+A S L
Sbjct:   60 LKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQVSNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEADSFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LACLA (Triosephosphate isomerase OS=Lactococcus lactis subsp. lactis GN=tpiA PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AA+NS+    GAFTGE S   + D+G +++++GHSERR    E D+ I KKA    + G   I C GE L+  EAGKT +    Q++A    + +    N+VIAYEP+WAIGTGK AT E A E    +R  ++     +V+   RI YGGSV       L  K  +    VGGASL+A S L
Sbjct:   60 LKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLSAEQVSNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEADSFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ALHEH (Triosephosphate isomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 2
Query:   71 GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP-SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            GA+TGE++   L ++GC+ V++GHSERR +  E D+ +  K   AL  GL  I C+GE L+ R+AG+T  V  +QL A  +      + +V+AYEPVWAIGTG+ A+PEQAQ VHA +R    + +  ++A +  I+YGGSV   N  EL     +    +GGASL     L
Sbjct:   71 GAYTGEVAGAMLAEMGCRHVIVGHSERRAMHAETDEVVVDKVQAALRAGLTPIVCVGETLEARDAGETEQVVGRQLDAVLELGGFVVEKLVLAYEPVWAIGTGRTASPEQAQAVHAFIRQRAADALGDELAQRLPILYGGSVKPGNARELFGCADVDGGLIGGASLDPDGFL 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_BRASO (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain ORS278) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 76/184 (41.30%), Postives = 101/184 (54.89%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            + + AQ+      GA TG+IS E L D G   V++GHSERR   GE D  + +KA  A   GL  I C+GE  Q+R+AG T ++   QL          DN+++AYEPVWAIGTG   T    +++H+ +R  L      +   + RI+YGGSV  SN AEL     +    VGGASLKA   L
Sbjct:   63 VAVGAQDCHAKASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDVVVHQKAEAAWRAGLVAIVCVGETQQQRDAGLTLEILRGQLTLSLPEGSRADNLIVAYEPVWAIGTGLTPTAGDVEQIHSFIRQLLIVRFK-EQGARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFL 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMF (Triosephosphate isomerase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 79/186 (42.47%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV--VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            + +AAQN +    GAFTGEIS   L D+G  +V++GHSERR    E D+ I KKA      G+  I C GE L +REAG+T      Q++A    +     +  VIAYEP+WAIGTGK +T   A E  A +R  + + VS   A   RI YGGSV   N A+   +  +    VGGASL+  S L
Sbjct:   59 LRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFL 244          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS1_LISIN (Triosephosphate isomerase 1 OS=Listeria innocua GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 79/186 (42.47%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV--VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            + +AAQN +    GAFTGEIS   L D+G  +V++GHSERR    E D+ I KKA      G+  I C GE L +REAG+T      Q++A    +     +  VIAYEP+WAIGTGK +T   A E  A +R  + + VS   A   RI YGGSV   N A+   +  +    VGGASL+  S L
Sbjct:   59 LRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFL 244          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPE (Triosephosphate isomerase OS=Mycoplasma penetrans GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQL-KAYADAIPS-WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            I++ AQ++     GA+TG IS  QLKD G    ++GHSERR +  E D+ +  K    +   +  + C+GE L+E EA K+FDV + Q  KA A+   +   NVVIAYEPVWAIGTGKV T ++  ++   +RD L    S        ++YGGSVN  N  E   ++ +    VG   LKA++ +
Sbjct:   57 IKVIAQDAHFKNEGAYTGNISWSQLKDCGIDGSIIGHSERRQMFNETDETVNLKTISLVENNMQAVVCVGETLEEYEANKSFDVVWNQTKKALANVSEAQLKNVVIAYEPVWAIGTGKVPTGKEVDDLIQKVRDELSKLYSKQAVESLVVLYGGSVNDKNAEEFFKQKNINGALVGSFCLKAENFV 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMO (Triosephosphate isomerase OS=Mycoplasma mobile GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 77/182 (42.31%), Postives = 102/182 (56.04%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            IAAQN      GAFTGEIS E L D+G K VVLGHSERR    E D+ +  K   A+   L  I C+GE   +  + K+ +V   Q++     +  +  ++IAYEP+WAIGTGK AT E AQE+   +R  L N        KT I YGGSV  +N  EL +++ +    VGGASL  +  +
Sbjct:   65 IAAQNFHQNNSGAFTGEISAEMLLDLGVKMVVLGHSERREFFHETDEIVNMKMHQAIKNNLVPIVCVGETELQYNSNKSKEVIKNQIEKSLKNLSDFSKIIIAYEPIWAIGTGKTATVEYAQEMCKYIRS-LTNE-------KTIIQYGGSVKPNNIKELLSQKDIDGALVGGASLNVKDFI 238          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ONYPE3.682e-3040.43Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_LACLS3.682e-3041.40Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_LACLM3.682e-3041.40Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_LACLA3.682e-3041.40Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_ALHEH3.682e-3042.44Triosephosphate isomerase OS=Alkalilimnicola ehrli... [more]
TPIS_BRASO4.809e-3041.30Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS1_LISMF6.281e-3042.47Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]
TPIS1_LISIN6.281e-3042.47Triosephosphate isomerase 1 OS=Listeria innocua GN... [more]
TPIS_MYCPE8.203e-3039.25Triosephosphate isomerase OS=Mycoplasma penetrans ... [more]
TPIS_MYCMO8.203e-3042.31Triosephosphate isomerase OS=Mycoplasma mobile GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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