BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6053 contig Csv1_Contig6053:371..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.422e-52
Identity = 107/190 (56.32%), Postives = 131/190 (68.95%), Query Frame = 2
Query:    5 QVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            Q +      I +AAQN +    GAFTGEISV+QL++    W +LGHSERR ++ E D+FI +K   A+  GL VI CIGE L+EREA KT DV  +QL A A  +    W  VVIAYEPVWAIGTGKVAT EQAQEVH+A+R WLK+ +SA+ A  TRIIYGGSV+  NC +LA +  +  F VGGASLK
Sbjct:   49 QAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLK 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 4.942e-51
Identity = 100/182 (54.95%), Postives = 130/182 (71.43%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            ++ ++AQN +    GAFTGE+SVEQL+D    W + GHSERR ++ EDD+F+ +K   A++ GL VI CIGE L+EREAGKT DV  +QL A A+ +    W+ VVIAYEP+WAIGTGKVAT EQAQEVHA++R WL   +S + A   R+IYGGSV  +NC +LA +  +  F VGGASLK
Sbjct:   57 QVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLK 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.942e-51
Identity = 96/182 (52.75%), Postives = 126/182 (69.23%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            ++ + AQN++    GA+TGE SV+Q+KD+G KWV+LGHSERR    EDD+ + +K A+AL  G+ VI CIGE L E++AG T DV  +QL    + +  W NVVIAYEPVWAIGTG  AT E AQ++HAA+RD+L    S DVA   RI++GGS NG+N A   +K  +  F VGGASLK +
Sbjct:   58 QVTVGAQNAYTKASGAYTGENSVDQIKDVGAKWVILGHSERRTYFNEDDEQVAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 198.364 bits (503), Expect = 2.453e-50
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            I + AQN +  K GA+TGE S + L D G  + + GHSERR +  E D+F+  K  +AL +GL V+ACIGE L EREA +T +V  +QL A AD + +W  +VIAYEPVWAIGTGK ATPEQAQEVHA +R W  N + A VA   R+IYGGSVNG NC E      +  F VGGASLK +
Sbjct:   59 IGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.453e-50
Identity = 98/192 (51.04%), Postives = 129/192 (67.19%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNSRN 604
            ++ +  QN++    GA+TGE SV+QLKD+G KWV+LGHSERR    EDD+ + +K  +AL +GLGVI CIGE L+E++AG T  V  +QL A    +  W NVVIAYEPVWAIGTG  AT E AQ++H ++R +L   +  D A KTRI+YGGS NG+N     +K  +  F VGGASLK +  +   NSRN
Sbjct:   58 QVTVGGQNTYTKASGAYTGENSVDQLKDVGAKWVILGHSERRTYFHEDDKIVAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPE-FVDIINSRN 248          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.184e-50
Identity = 102/181 (56.35%), Postives = 126/181 (69.61%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            I+A+N+ + K GAFTGE+S+  LKDIG  WV+LGHSERR   GE D+ + +K + A  +G  VIACIGE LQ+REA +T  V   Q  A A  +   +W+ VV+AYEPVWAIGTGKVATPEQAQEVH  LR W+  N+  DVA K RI+YGGSVN +N A L  K  +  F VGGASLK +
Sbjct:   63 ISAENA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 5.464e-50
Identity = 102/181 (56.35%), Postives = 126/181 (69.61%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            IAAQN+ + K GAFTGE+S+  LKD G  W+VLGHSERR   GE ++ +  K A A++ G  VIACIGE LQERE+G+T  V   Q+ A A  +    W  VVIAYEPVWAIGTGKVATP+QAQE HA +R W+ + + ADVA + RI+YGGSVNG N   L  +R +  F VGGASLK +
Sbjct:   62 IAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.464e-50
Identity = 100/182 (54.95%), Postives = 128/182 (70.33%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            ++ +++QN +    GAFTGEISV QL+D    W ++GHSERR ++ E D+FI +K   A+  G+ VI CIGE L+EREA KT +V  +QL A A  +    W  VVIAYEPVWAIGTGKVAT +QAQEVHAA+R WL + +S + +  TRIIYGGSV+  NC ELA +R +  F VGGASLK
Sbjct:   59 KVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDGFLVGGASLK 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 93/182 (51.10%), Postives = 125/182 (68.68%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            ++ +AAQN+++   GAFTGE SVEQ+KD+G +WV+LGHSERR    E D+FI  K  +AL  G+ VI CIGE L+E++ G T +V  +QL+A  D +  W NVV+AYEPVWAIGTG  AT + AQ +H ++R++L   +S D A K RI+YGGS NG N     +K  +  F VGGASLK +
Sbjct:   58 QVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPE 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.758e-48
Identity = 99/181 (54.70%), Postives = 120/181 (66.30%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            + +A QNS+    GAFTGE+SV QLKD+G KWV+LGHSERR +  E  ++I  K  YAL  GL VI CIGE + E++AGKT DV   QL      I  W NVVIAYEPVWAIGTG  AT E AQ++H  +R +LK+ + A  A K RIIYGGSVNG N     +K  +  F VGGASLK +
Sbjct:   59 VSVAGQNSFDKGDGAFTGEVSVAQLKDVGAKWVILGHSERRTINKESSEWIADKTKYALDNGLDVILCIGETIDEKKAGKTLDVVRSQLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPE 238          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_EMENI3.422e-5256.32Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_PARBA4.942e-5154.95Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_ASHGO4.942e-5152.75Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_SCHPO2.453e-5054.14Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_CANGA2.453e-5051.04Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_LEIME4.184e-5056.35Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_TRYBB5.464e-5056.35Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_ASPOR5.464e-5054.95Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_KLUMA3.542e-4951.10Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_YARLI1.758e-4854.70Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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