BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.458e-42
Identity = 98/194 (50.52%), Postives = 132/194 (68.04%), Query Frame = 2
Query:    2 DQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            +QV + L  + I + AQNS V  + GA TGE++ EQL + GCK V++GHSERR VIGE D+ + +K A A ++GL  + CIGE L+EREAGKT +V  +QL +  +A  + ++ N VIAYEPVWAIGTG  ATP+QAQ+VHAA+R  L     A+VA K +++YGGSV  +N AEL     +    +GGASL A
Sbjct:   47 NQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNA 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.153e-42
Identity = 90/188 (47.87%), Postives = 120/188 (63.83%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS----WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++ AQN  V   GAFTGEIS E LKD+GC +V+LGHSERR + GE ++ + +K A A  +GL  I C+GE L++REA +T  V  QQL A    +P+       +V+AYEPVWAIGTGKVA+  QAQE HA +R  L   + A+VA   RI+YGGS+   N  EL  +  +    +GGA+LKA   L
Sbjct:   60 VDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKELLGQADVDGGLIGGAALKANDFL 247          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.220e-41
Identity = 91/184 (49.46%), Postives = 124/184 (67.39%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKG-GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            ++ + AQ+  +  G GA TGE+S +QL D+GC+WV++GHSERR V+GE D+ + +K A A + GL  + C+GE L+EREAG+T +V  +QL    D   + ++ + VIAYEPVWAIG+G  ATPEQAQEVHAA+RD L  +    +A   R++YGGSV   N AEL     +    VGGASLKA
Sbjct:   57 QVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQLARS-DRRIAEGVRLLYGGSVKADNAAELFAMADIDGGLVGGASLKA 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.220e-41
Identity = 96/194 (49.48%), Postives = 132/194 (68.04%), Query Frame = 2
Query:    2 DQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            +QV + L  + I + AQNS V  + GA TGE++ EQL + GCK V++GHSERR +IGE D+ + +K A A ++GL  + CIGE L+EREAGKT +V  +QL +  +A  + ++ + VIAYEPVWAIGTG  ATP+QAQ+VHAA+R  L     A+VA K +++YGGSV  +N AEL     +    +GGASL A
Sbjct:   47 NQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNA 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.220e-41
Identity = 96/194 (49.48%), Postives = 132/194 (68.04%), Query Frame = 2
Query:    2 DQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            +QV + L  + I + AQNS V  + GA TGE++ EQL + GCK V++GHSERR +IGE D+ + +K A A ++GL  + CIGE L+EREAGKT +V  +QL +  +A  + ++ + VIAYEPVWAIGTG  ATP+QAQ+VHAA+R  L     A+VA K +++YGGSV  +N AEL     +    +GGASL A
Sbjct:   47 NQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNA 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.081e-41
Identity = 88/187 (47.06%), Postives = 121/187 (64.71%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            ++ + AQN  V K GAFTGEIS + +KD G K+V++GHSERR + GE D+ + +K   AL   L  + CIGE L++RE+  T  V  +Q++   D   I ++ N+++AYEPVWAIGT   ATP+QAQ+ HA +R  L     AD+A  T I+YGGS+N  N AEL N + +    +GGASLKAQ  L
Sbjct:   57 QLNLGAQNLNVNKLGAFTGEISADMIKDFGAKYVIVGHSERRSLYGETDEIVAQKVQVALDNNLTPLFCIGELLEDRESNNTKSVVSKQIQVVIDRVGIEAFKNIIVAYEPVWAIGTNVTATPQQAQDTHAFIRSMLA-EYDADIAQITSILYGGSMNSRNAAELLNCKDIDGGLIGGASLKAQDFL 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.081e-41
Identity = 93/183 (50.82%), Postives = 124/183 (67.76%), Query Frame = 2
Query:   32 IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            I + AQNS V  + GA TGE++  QL ++GCK+V++GHSERR VIGE ++ + +K A A   GL  + CIGE L+EREAGKT +V  +QL +  DA  I ++ N VIAYEPVWAIGTG  A+P+QAQ+VHAA+R  L     A+VA   +++YGGSV  +N AEL     +    +GGASL A
Sbjct:   58 ITVGAQNSAVQPEQGALTGEVAPSQLAEVGCKFVLIGHSERRQVIGESEEVLNRKFAAAQKSGLTPVLCIGETLEEREAGKTLEVVGRQLSSVIDAFGIAAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLAAK-DAEVAQNVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNA 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.081e-41
Identity = 95/196 (48.47%), Postives = 122/196 (62.24%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++KNS    I I AQN +    GAFTGEIS+E LKD+GC WV++GHSERRH+IGE    I +K   ALS G  +I CIGE  QEREAG    V  QQL+     IPS     +VIAYEPVWAIGTGKVA+ +     H  +R  L +N+  + +   RI+YGGSVN  N + +     +    VGGASL+A+S +
Sbjct:   52 EKLKNST---IVIGAQNFYPAPSGAFTGEISLEMLKDVGCSWVLIGHSERRHIIGELPTLIEQKTKLALSYGFSIILCIGETAQEREAGLVNSVLEQQLRTSLTDIPSKAISQLVIAYEPVWAIGTGKVASQQDIITAHTLIRKIL-HNMIGNTSQNIRILYGGSVNSENASSILELDNVNGLLVGGASLQAESFM 243          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.908e-41
Identity = 92/183 (50.27%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   32 IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            I + AQNS V  + GA TGE++  QL ++GCK+V++GHSERR +IGE D+ + +K A A   GL  + CIGE L EREAG+T  V  +QL +  DA  I ++ N VIAYEPVWAIGTG  A+P+QAQ+VHAA+R  L   + A+VA   +++YGGSV  +N AEL     +    +GGASL A
Sbjct:   58 INVGAQNSAVQPEQGALTGEVAPSQLAEVGCKYVLVGHSERRQIIGESDEVLNQKFAAAQKSGLTPVLCIGETLAEREAGETLKVVGRQLSSVIDAFGIKAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLA-AMDAEVAANVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNA 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.349e-40
Identity = 85/186 (45.70%), Postives = 117/186 (62.90%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            I +AAQN +    GAFTGE+S   LKD GC++V++GHSERR +  E D FI +K    +  GL  I CIGE L+EREA KTFDV  +Q++   + +   + + +V+AYEPVWAIGTGK AT  QAQ+ H+ +R  + +   + VA + RI+YGGSV   N   L  +  +    VGGASL A+  +
Sbjct:   59 ISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSVKPGNVDGLLQQPDIDGALVGGASLNAEDFI 244          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEPG2.458e-4250.52Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_MAGSM7.153e-4247.87Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_PSEU51.220e-4149.46Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_PSEPK1.220e-4149.48Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP11.220e-4149.48Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_RUTMC2.081e-4147.06Triosephosphate isomerase OS=Ruthia magnifica subs... [more]
TPIS_PSEPW2.081e-4150.82Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_LAWIP2.081e-4148.47Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_PSEE47.908e-4150.27Triosephosphate isomerase OS=Pseudomonas entomophi... [more]
TPIS_PELCD1.349e-4045.70Triosephosphate isomerase OS=Pelobacter carbinolic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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