BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ERWCT (Triosephosphate isomerase OS=Erwinia carotovora subsp. atroseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.762e-40
Identity = 97/195 (49.74%), Postives = 120/195 (61.54%), Query Frame = 2
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            DQ  + L   RI + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+FI KK       GL  + CIGE   E EAG+T  VC +QL A  + +   +++N V+AYEPVWAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN +N AEL  +  +    VGGASLKA +
Sbjct:   48 DQANHQLAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFGVLKDAGLIPVLCIGETEAENEAGQTEAVCARQLDAVLNTLGAKAFENTVVAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADA 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.762e-40
Identity = 91/186 (48.92%), Postives = 120/186 (64.52%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            I++AAQN +    GA+TGEIS   L++ GC++V+LGHSERR    E D+ + KK   ALS  L VI C+GE L++RE+G T  V   Q++     + + D  +VVIAYEPVWAIGTGK ATPEQAQEVHA +R  +K+    +VA + RI YGGSV  SN  EL     +    +GGASL A+  +
Sbjct:   60 IKLAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFV 245          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.005e-40
Identity = 95/184 (51.63%), Postives = 115/184 (62.50%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+FI KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN SN AEL  +  +    VGGASLKA +
Sbjct:   59 IILGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KADAKVAEQVIIQYGGSVNASNAAELFTQPDIDGALVGGASLKADA 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_VESOH (Triosephosphate isomerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.126e-40
Identity = 83/187 (44.39%), Postives = 127/187 (67.91%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            ++ + AQ+  + K GAFTGE+SV+ +KD G ++V++GHSERR +  E+++ + +K   AL+  L  + CIGE L++R++GKT +V  +Q++A  D   I ++ ++++AYEPVWAIGTG  ATP+QAQ+ HA +R  L      +V+  T I+YGGS+N  N AEL N + +    +GGASLKAQ  L
Sbjct:   57 QLNLGAQDLNINKSGAFTGEVSVDMIKDFGARYVIVGHSERRSLYFENNEIVAQKVQVALNNNLTPLLCIGELLEDRDSGKTQEVVSEQIQAVIDLVGIDAFKDIIVAYEPVWAIGTGITATPQQAQDTHAFIRSMLA-KYDDNVSQITSILYGGSMNPRNAAELMNCKDIDGGLIGGASLKAQDFL 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.695e-40
Identity = 81/189 (42.86%), Postives = 115/189 (60.85%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            D  +  L  +     QN      G++TGE+S E  KD+  ++V++GH ERR    E D+ + +K   +L   L  + C GE L++RE  KT +V  +Q+KA+ D I ++DNV++AYEP+WAIGTGK ATPEQAQ VH  +R  +K+      A + RI+YGGSVN  NC+ L  +  +  F VG ASLK
Sbjct:   49 DHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK 237          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.695e-40
Identity = 81/189 (42.86%), Postives = 115/189 (60.85%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLK 568
            D  +  L  +     QN      G++TGE+S E  KD+  ++V++GH ERR    E D+ + +K   +L   L  + C GE L++RE  KT +V  +Q+KA+ D I ++DNV++AYEP+WAIGTGK ATPEQAQ VH  +R  +K+      A + RI+YGGSVN  NC+ L  +  +  F VG ASLK
Sbjct:   49 DHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK 237          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.744e-40
Identity = 94/184 (51.09%), Postives = 115/184 (62.50%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++ VVIAYEPVWAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN +N AEL  +  +    VGGASLKA +
Sbjct:   59 IVLGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADA 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.744e-40
Identity = 86/181 (47.51%), Postives = 112/181 (61.88%), Query Frame = 2
Query:   29 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKA 571
            R+ + AQN      GAFTGE+S   +++ GC  V+ GHSERRH  GE +  + +K  +ALSEGL VI C GE L++RE G T DV   Q++     I    N+VIAYEPVWAIGTGK AT EQA+EVH  +R+ + +    + A + RI YGGSV  SN  EL +   +    +GGASL A
Sbjct:   58 RLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGLIGGASLNA 238          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.142e-39
Identity = 86/193 (44.56%), Postives = 123/193 (63.73%), Query Frame = 2
Query:   11 KNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            ++++   + I +QN    + GAFTGE+S   L ++GC +V++GHSERR + GE D  I  K A+A + GL  I C+GE L+ER++G T  +   QL+A  DA  + ++ N ++AYEPVWAIGTGK A+PEQAQ VHA LR +L  +   D+A   R++YGGSV   N A L  +  +    +GGASL A S +
Sbjct:   49 RSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFLAKD-DPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGLIGGASLTADSFI 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_DESVV (Triosephosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.491e-39
Identity = 90/183 (49.18%), Postives = 116/183 (63.39%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLK---AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I  Q+ +    GA+TGEI+   L D GC WV+ GHSERRH++GEDD+ + +K A++L  GL V+ CIGE+L EREAG+  DV   QL+   A  DA     ++V+AYEPVWAIGTGKVA P +  E HA +R  L+     D A   RI+YGGSV   N AEL +   +    VGGASL+A S
Sbjct:   63 IGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRDGAA-IRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQAVS 244          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ERWCT1.762e-4049.74Triosephosphate isomerase OS=Erwinia carotovora su... [more]
TPIS_CHLT31.762e-4048.92Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_ENTCL3.005e-4051.63Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_VESOH5.126e-4044.39Triosephosphate isomerase OS=Vesicomyosocius okuta... [more]
TPIS_PLAFA6.695e-4042.86Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF76.695e-4042.86Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_ENT388.744e-4051.09Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_CHLPD8.744e-4047.51Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_ALCBS1.142e-3944.56Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_DESVV1.491e-3949.18Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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