BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_DESVH (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.491e-39
Identity = 90/183 (49.18%), Postives = 116/183 (63.39%), Query Frame = 2
Query:   38 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLK---AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I  Q+ +    GA+TGEI+   L D GC WV+ GHSERRH++GEDD+ + +K A++L  GL V+ CIGE+L EREAG+  DV   QL+   A  DA     ++V+AYEPVWAIGTGKVA P +  E HA +R  L+     D A   RI+YGGSV   N AEL +   +    VGGASL+A S
Sbjct:   63 IGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRDGAA-IRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQAVS 244          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_AQUAE (Triosephosphate isomerase OS=Aquifex aeolicus GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.491e-39
Identity = 88/183 (48.09%), Postives = 114/183 (62.30%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLK-AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +++ AQN    K GAFTGEIS+  L+++GC++V++GHSERRH+ GE D+ I KK    L  G+  I C+GE+ +EREAG TF V   Q+K A        D + IAYEPVWAIGTG  ATPE A EVH  +R+ L N ++     KTRI+YGGSVN  N  E      +    VG ASL  +S
Sbjct:   58 VKLGAQNCHYEKRGAFTGEISIPMLQEVGCEYVIVGHSERRHIFGESDELIHKKIVACLEMGIRPILCVGEKKEEREAGMTFKVIETQIKLALTGVEEHTDKIDIAYEPVWAIGTGTPATPEDAVEVHTFIRN-LINQLNPKNEGKTRILYGGSVNPQNAKEFMKHEEINGLLVGTASLDPES 239          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.948e-39
Identity = 86/184 (46.74%), Postives = 112/184 (60.87%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLL 583
            +++AAQN      GAFTGE+S   L   GC +V+LGHSERR + GE ++ + +K   AL+EGL VI C+GE L EREAG T  +   Q+      +     +VIAYEPVWAIGTGK AT EQAQ+VHA++R  ++       A   RI YGGSV  SN AEL     +    +GGASLK +  +
Sbjct:   60 VQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLADVSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLKVEDFM 243          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.544e-39
Identity = 94/195 (48.21%), Postives = 120/195 (61.54%), Query Frame = 2
Query:    2 DQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            +Q K+ L+  RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+FI KK       GL  + CIGE   E EAG+T  VC +QL A  + +   +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   48 NQAKHELSGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDEFIAKKFGVLKEVGLTPVLCIGETEAENEAGQTEAVCAKQLDAVLNTLGAKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQ-DAAIAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADA 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PHOLL (Triosephosphate isomerase OS=Photorhabdus luminescens subsp. laumondii GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.323e-39
Identity = 94/194 (48.45%), Postives = 120/194 (61.86%), Query Frame = 2
Query:    5 QVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            Q K +L   RI + AQ+  V   GAFTGE S   LKDIG +++++GHSERR    E D+FI KK A    +GL  + CIGE  QE EAG+T  VC +Q+ A  +   + ++   VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN  N AEL ++  +    VGGASLKA +
Sbjct:   49 QAKQALAGSRIALGAQDVDVNLSGAFTGETSATMLKDIGAEYIIIGHSERRTYHQESDEFIAKKFAILKQQGLIPVLCIGETEQENEAGQTESVCARQIDAVLNTLGVAAFQGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAQK-DAAIAQQIIIQYGGSVNADNAAELFSQPDIDGALVGGASLKANA 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.323e-39
Identity = 92/184 (50.00%), Postives = 113/184 (61.41%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++ VVIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN  N AEL  +  +    VGGASLKA +
Sbjct:   59 IHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADA 241          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_HAES1 (Triosephosphate isomerase OS=Haemophilus somnus (strain 129Pt) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.323e-39
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I +  QN  + K GAFTG+IS E LKD G K+V++GHSERR    E D+FI KK       GL  + CIGE   E EAGKT +VC +Q+ A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  +  +    VGGASLKA +
Sbjct:   60 IALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVMNTLGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAKQSQA-VAERVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKASA 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.323e-39
Identity = 90/194 (46.39%), Postives = 118/194 (60.82%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            D VK      ++IAA+N +    GA+TGE+S + LKDIG  +V+LGHSERR    E D+FI +K    L  G+  I CIGE+L++RE GKT +V  +Q+K     +   D    ++AYEPVWAIGTGK ATPE AQE H  +R+ L      DVA K  I YGGS+   N  +L ++  +    VGGASLKA S
Sbjct:   49 DAVKIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIRNVLAEMFGKDVADKMIIQYGGSMKPENAKDLLSQEDIDGGLVGGASLKADS 242          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PELPD (Triosephosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNSR 601
            I +AAQ+ +  + GAFTGE+S  QL+D GC  V++GHSERR + GE D+ + +KA  A++ GL  I C+GE ++ERE+  TF V  +Q+ A      S  +  +VIAYEPVWAIGTGK AT +QAQEVH  +R+ +  ++S  +A   RI+YGGSV   N   L  +  +    +GGASLKA S     N R
Sbjct:   59 IGLAAQDCFWEEQGAFTGEVSPAQLRDAGCSHVIIGHSERRQLFGETDEGVNRKARAAVAVGLTAIICVGETMEERESRATFTVVGRQVTAALAGFLSHEFSRIVIAYEPVWAIGTGKTATDQQAQEVHCYIRNLVTMSISQAIADSLRILYGGSVKPDNIRGLMAQPDIDGALIGGASLKAASFAEMVNFR 250          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39
Identity = 90/184 (48.91%), Postives = 115/184 (62.50%), Query Frame = 2
Query:   32 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQS 577
            I +  QN  + K GAFTG+IS E LKD G K+V++GHSERR    E D+FI KK       GL  + CIGE   E EAGKT +VC +Q+ A  +   + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGS+N +N AEL  +  +    VGGASLKA +
Sbjct:   60 IALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVMNTLGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAKQSQA-VAERVIIQYGGSINDANAAELFTQPDIDGALVGGASLKASA 242          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DESVH1.491e-3949.18Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_AQUAE1.491e-3948.09Triosephosphate isomerase OS=Aquifex aeolicus GN=t... [more]
TPIS_CHLP81.948e-3946.74Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_YERE82.544e-3948.21Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_PHOLL3.323e-3948.45Triosephosphate isomerase OS=Photorhabdus luminesc... [more]
TPIS_KLEPN3.323e-3950.00Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_HAES13.323e-3949.46Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_FUSNN3.323e-3946.39Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_PELPD4.339e-3945.83Triosephosphate isomerase OS=Pelobacter propionicu... [more]
TPIS_HAES24.339e-3948.91Triosephosphate isomerase OS=Haemophilus somnus (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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