BQ623847

Overview
NameBQ623847
Unique NameBQ623847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: THAS_MACFA (Thromboxane-A synthase OS=Macaca fascicularis GN=TBXAS1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 55/167 (32.93%), Postives = 90/167 (53.89%), Query Frame = 3
Query:   27 LSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRF--ERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWE 521
            L A ++  + T++     LA  P+  EK+ +E     +     E  S+++   + Y   VI+E+LR+ PPA    REA +D    G RIP G  +  ++ A + +PE++PSPETF+P RF  E      P++Y+PFG G   C G     L++ L + H + KF+++
Sbjct:  339 LIAGYEIVTNTLSFATYLLATNPDCQEKLLREVDLFKEKHMVPEFCSLEE--GLPYLDMVIAETLRMYPPAFRFTREAAQDCEVLGQRIPAGAVLEMAVGALHHDPEHWPSPETFNPERFTAEAQQQHRPFTYLPFGAGPRSCLGVRLGLLEVKLTLLHVLHKFQFQ 503          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: THAS_BOVIN (Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = 3
Query:   27 LSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRF--ERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWE 521
            L A ++  + T++     LA  PE  EK+ +E    +K     E  S+++   + Y   VI E+LR+ PPA    R A +D    G RIP G  +  ++ A + +PE++P+PE F+P RF  E      PY+Y+PFG G   C G     L++ L + H +RKF++E
Sbjct:  339 LIAGYEIVTNTLSFATYLLATNPECQEKLLEEVDCFSKEHLAPEYCSLQE--GLPYLDMVIKETLRMYPPAFRFTRVAAQDCEVLGQRIPAGAVLETAVGALHYDPEHWPNPENFNPERFTAEAQQRRRPYTYLPFGAGPRSCLGVRLGLLELKLTLLHILRKFRFE 503          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: CP4V3_RAT (Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 59/176 (33.52%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   42 DNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRF--ERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWEKVNPDEPNDKRSRL 563
            D  +A I   +  L   PE+  KV KE  ++        P++++D+KK+ Y   VI E+LR+ P      R   ED    G++I KG +     +A +R+P YFP PE F P RF  E +    PY+YVPF  G   C G+ +A ++    +   +R+F W      E N KR  L
Sbjct:  332 DTTAAAINWSLYLLGSNPEVQRKVDKELDDVFGRSH--RPVTLEDLKKLKYLDCVIKETLRVFPSVPLFARSLSEDCEVAGYKISKGTEAVIIPYALHRDPRYFPDPEEFQPERFFPENSQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILACILREF-W-----IESNQKREEL 499          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 54/175 (30.86%), Postives = 90/175 (51.43%), Query Frame = 3
Query:    3 LAKNLVALLSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRFER--NDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWE 521
            L    +  + A ++  S+ ++ IM  LA  P++ +K+++E   +  +KAP    +   + +M Y   V++E+LRL P A    R   +D    G  IPKG  V    +A +R+P+Y+  PE F P RF +   D I PY Y PFG G   C G  +A + + L +   ++ F ++
Sbjct:  295 LVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPP---TYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 3
Query:   18 VALLSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRF--ERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWEKVNPDEPNDKRSR 560
            V  + A ++  S+T++ ++  LA  P+I +K+++E      SKAP    +   + +M Y   V++E+LRL P  +   R   +D   +G  IPKG  V    +A + +P+++P PE F P RF  E    I PY Y+PFG G   C G  +A + + L +   ++ F ++     +   K SR
Sbjct:  301 VIFIFAGYETTSSTLSFVLYFLATHPDIQKKLQEEIDGALPSKAPP---TYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHWPKPEEFHPERFSKENKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQPCKETQIPLKLSR 480          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: C11B1_MESAU (Cytochrome P450 11B1, mitochondrial OS=Mesocricetus auratus GN=CYP11B1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 3
Query:   12 NLVALLSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRF-ERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWEKVNPDEPNDKRS--RLVSCPGDS 584
            N + L + + D  S  +   +  LA  P++ + VR+E +    S A     +M D+  +    +V+ E+LRL P A    R    D   + + +P G  +H S+++  RNP  FP PE + P R+ ERN     + ++ FG G   C GK  A++++LL +HH ++ F   +V   E  D R   R V  P  S
Sbjct:  306 NSLELTAGSVDTTSVPLVMTLFELARNPDVQQAVRQESLAAEASVAANPQRAMSDLPLLR---AVLKETLRLYPVAVFLERILSSDLVLQNYHVPAGTILHMSLYSMGRNPAVFPRPEHYLPQRWLERNG---SFQHLTFGFGVRQCLGKRLAQVEMLLLLHHVLKSF---RVETQEREDVRMVYRFVLAPSSS 490          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: CP4AA_RAT (Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a10 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 49/159 (30.82%), Postives = 85/159 (53.46%), Query Frame = 3
Query:   42 DNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNY-EGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRFERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFK 515
            D  ++ ++ I   LA  PE  ++ R+E   +      G  ++   + ++ Y+   I E+LRL PP  G  RE      + +G  +PKG +V  SI+  + NP+ +P+PE FDPSRF  + P   +S++PF GG   C GK +A  ++ + +   + +F+
Sbjct:  323 DTTASGVSWIFYALATHPEHQQRCREE---VQSVLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGIQVTLSIYGLHHNPKVWPNPEVFDPSRFAPDSPRHSHSFLPFSGGARNCIGKQFAMSEMKVIVALTLLRFE 478          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: CP46A_MOUSE (Cholesterol 24-hydroxylase OS=Mus musculus GN=Cyp46a1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 51/175 (29.14%), Postives = 87/175 (49.71%), Query Frame = 3
Query:    3 LAKNLVALLSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRFERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWEKV 527
            L  N V    A  +  +  +   +  L+  PEI  +++ E  E+  SK     +  +D+ ++ Y   V+ ESLRL PPA GTFR   E+   +G R+P    + +S +   R   YF  P TF+P RF    P   ++Y PF  G   C G+ +A++++ + M   +++ ++  V
Sbjct:  292 LLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVVGSK---RHLDYEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRIEFRLV 463          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 54/170 (31.76%), Postives = 91/170 (53.53%), Query Frame = 3
Query:   18 VALLSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRFER--NDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWE 521
            + +L A ++  S+T++ IM  LA  P++ +K+++E   +  +K   E  +   + KM Y   V++E+LRL P A    R   +D +  G  IPKG  V    +A +R+P+++  P+ F P RF +   D I PY Y PFG G   C G  +A + I L +   ++ F ++
Sbjct:  298 IIILFAGYETTSSTLSFIMHLLATHPDVQQKLQEEIDTLLPNK---ELATYDTLVKMEYLDMVVNETLRLYPIAGRLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTEPDEFRPERFSKKNKDNINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFK 464          
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 53/174 (30.46%), Postives = 90/174 (51.72%), Query Frame = 3
Query:    3 LAKNLVALLSAAFDNPSATITSIMKNLADLPEISEKVRKEQIEIAKSKAPGEPMSMKDIKKMTYSMSVISESLRLEPPASGTFREAIEDFNYEGFRIPKGWKVHWSIHATNRNPEYFPSPETFDPSRF-ERNDPIVPYSYVPFGGGQHICPGKDYAKLQILLFMHHAVRKFKWE 521
            LA   +  + A ++  S+ ++  +  LA  P++ +K++KE   +  +KAP    +   + +M Y   V++E+LRL P A    R   +D    G  IPKG  V    +A + +P+Y+  PE F P RF ++ D I PY Y PFG G   C G  +A + + L +   ++ F ++
Sbjct:  295 LAAQSIIFIFAGYETTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPP---TYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYWTEPEEFRPERFSKKKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 465          
The following BLAST results are available for this feature:
BLAST of BQ623847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
THAS_MACFA1.891e-1732.93Thromboxane-A synthase OS=Macaca fascicularis GN=T... [more]
THAS_BOVIN1.891e-1734.13Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=... [more]
CP4V3_RAT1.891e-1733.52Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3... [more]
CP3A4_HUMAN1.891e-1730.86Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
CP3A2_RAT2.469e-1730.60Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
C11B1_MESAU2.469e-1730.41Cytochrome P450 11B1, mitochondrial OS=Mesocricetu... [more]
CP4AA_RAT3.225e-1730.82Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a... [more]
CP46A_MOUSE3.225e-1729.14Cholesterol 24-hydroxylase OS=Mus musculus GN=Cyp4... [more]
CP3A6_RABIT3.225e-1731.76Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP3A5_HUMAN3.225e-1730.46Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00927 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00927 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623847 ID=BQ623847; Name=BQ623847; organism=Citrus sinensis; type=EST; length=584bp
TTCTTGCAAAGAACTTGGTAGCATTACTCTCAGCAGCCTTTGACAATCCT
AGCGCAACCATTACTTCCATTATGAAAAATCTTGCGGACCTGCCTGAAAT
TTCTGAAAAAGTCCGTAAAGAGCAAATAGAGATAGCAAAGTCGAAAGCAC
CAGGAGAGCCTATGAGTATGAAGGACATAAAAAAGATGACGTACTCAATG
AGTGTGATAAGTGAATCGTTAAGATTAGAACCCCCAGCGTCTGGAACTTT
CAGAGAAGCTATTGAAGACTTCAACTACGAAGGATTTCGGATTCCCAAGG
GATGGAAGGTACACTGGAGTATACATGCAACAAATAGAAACCCTGAATAT
TTTCCAAGCCCGGAAACGTTTGACCCATCAAGATTTGAAAGAAATGATCC
GATTGTTCCTTACTCTTACGTGCCATTTGGAGGAGGACAGCACATATGTC
CTGGAAAAGATTATGCAAAATTACAAATACTCTTATTCATGCATCATGCA
GTGAGAAAATTCAAGTGGGAGAAAGTGAACCCAGATGAGCCAAATGATAA
GAGATCCAGACTTGTCTCCTGCCCAGGGGACTCC
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