BQ623849

Overview
NameBQ623849
Unique NameBQ623849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:23..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.548e-46
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI--TLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N +I   HF K WQ  V TWFNQP                I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI    ++    ++  +++ K+FKA+  LR+ RAN R F
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVI--SEEEKNFKAFASLRMARANARLF 192          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.196e-45
Identity = 95/187 (50.80%), Postives = 121/187 (64.71%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI            T++ K+FKA+  LR+ RAN R F
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLF 192          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.196e-45
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI--TLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI    +K    ++  T++ K+FKA+  LR+ RAN R F
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVI--TEEEKNFKAFASLRMARANARLF 192          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 94/189 (49.74%), Postives = 125/189 (66.14%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI--TLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N ++   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+    +K    ++  T++ K+FKA+  LR+ RAN R F
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVI--TEEEKNFKAFASLRMARANARLF 192          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 97/189 (51.32%), Postives = 124/189 (65.61%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI--TLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N +I   HF K WQ  V TWFNQP                I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI    +K    ++  T++ K+FKA+  LR+ RAN R F
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVI--TEEEKNFKAFASLRMARANARLF 192          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.389e-45
Identity = 92/184 (50.00%), Postives = 120/184 (65.22%), Query Frame = 2
Query:   41 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERA 592
            K NN+IPNGHF K WQ +VKTWFNQP                + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P       T++ K FKAY  LR  R+
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARS 185          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.428e-44
Identity = 95/189 (50.26%), Postives = 124/189 (65.61%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI--TLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I    +K    ++  T++ K+FKA+  LR+ RAN R F
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVI--TEEEKNFKAFASLRMARANARLF 192          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.513e-41
Identity = 84/178 (47.19%), Postives = 115/178 (64.61%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLR 580
            N+V+ + HF+K WQ  VKTWFNQP                I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIGI+VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PIT     +   K T     + A+  +R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.738e-40
Identity = 92/184 (50.00%), Postives = 115/184 (62.50%), Query Frame = 2
Query:   56 IPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKG-TQDMKSFKAYDKLRIERANERH 604
            +PN HF K WQ YVKTWFNQP                I PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIGI VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PIT E   V+  K  T++ K+F A+  L  ERA  R+
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE--AVEEAKPITEEAKNFNAFSTLSNERAYARY 188          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.352e-39
Identity = 86/181 (47.51%), Postives = 112/181 (61.88%), Query Frame = 2
Query:   44 HNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KGTQDMKSFKAYDKLR 580
            HN V+ N HF+KHWQ  V+TWFNQP                +FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIGI+VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T +    K T+  K F AY  L+
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLK 183          
The following BLAST results are available for this feature:
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK7.548e-4650.7960S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT2.196e-4550.8060S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE2.196e-4550.7960S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN3.746e-4549.7460S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN3.746e-4551.3260S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_SPOFR6.389e-4550.0060S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_CRIGR2.428e-4450.2660S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SCHMA2.513e-4147.1960S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_SCHPO4.738e-4050.0060S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_DICDI2.352e-3947.5160S ribosomal protein L13 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00929 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00929 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623849 ID=BQ623849; Name=BQ623849; organism=Citrus sinensis; type=EST; length=678bp
CGGAGATAGTCTTCTGCATTTCGCTCTGTAAACAAAAATGAAGCACAACA
ATGTAATTCCAAATGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAG
ACTTGGTTTAACCAACCGGCTCGCAAAAATCGACGACGAGTTGCTCGTCA
AAAGAAGGCCGTTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCC
CCGTCGTTCATGGCCAGACTTTGAAATATAACATGAAATTAAGGGCTGGC
AGAGGCTTTACTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACT
GGCTCCAACAATTGGCATTTCAGTCGATCATCGACGCAAGAACCGTTCTC
TTGAGGGTCTTCAATCTAATGTTCAGAGGCTGAAGACTTACAAGGCCAAG
TTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTTAAGGCTGGTGATTCTGC
TCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCCCA
TTACTCTTGAGAAGCCTACTGTCGACCTTGTTAAGGGTACTCAAGATATG
AAGTCCTTCAAGGCTTATGACAAGCTCCGGATTGAGCGTGCGAACGAGCG
CCATTTTTGGTGCCAGGTTGAAGAAGGCTGCAGAGGCTTGAAAGGAAGAG
AAGAAGTAAACAAAACTTGGTTAAGCAG
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