BQ623853

Overview
NameBQ623853
Unique NameBQ623853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623853 vs. ExPASy Swiss-Prot
Match: MTNK_BACA2 (Methylthioribose kinase OS=Bacillus amyloliquefaciens (strain FZB42) GN=mtnK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:    6 PDHVPEVYHFDRTMSLIGMRYLEPPHI-ILRKGLIAGIKYPLLAEHMSEFMAKTLFYTSLLYRTTTEHKRNVAEFCGNVELCRLTEQVVFSDPY---KVSKFNHWTSPYLDRDAEAVREDNTLK 365
            P  VP VY+ D  M++  M  L   H+ I RKGL+ G  YP L+ H+ EF+ KTLFY+S  Y    + K+ +A+   N ELC +TE++VF++P+   + + F     PY    AE V  ++ LK
Sbjct:   96 PHLVPAVYYSDTEMAVTVMEDLS--HLRISRKGLLEGQHYPNLSAHIGEFLGKTLFYSS-DYALDAKVKQQLAKQFTNPELCNITERLVFTEPFLDHETNDFEEELRPY----AEKVWNNSRLK 212
The following BLAST results are available for this feature:
BLAST of BQ623853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MTNK_BACA22.312e-1238.71Methylthioribose kinase OS=Bacillus amyloliquefaci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00933 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00933 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623853 ID=BQ623853; Name=BQ623853; organism=Citrus sinensis; type=EST; length=421bp
TGTGTCCTGACCATGTTCCCGAAGTCTATCATTTTGACCGTACAATGTCT
TTGATTGGTATGCGGTACCTGGAGCCTCCTCATATTATCCTGAGAAAGGG
GTTGATTGCTGGAATAAAGTATCCATTACTTGCGGAACACATGTCAGAAT
TCATGGCAAAGACTCTTTTCTACACATCTCTTTTATATCGTACCACCACA
GAGCACAAACGTAATGTTGCTGAATTTTGTGGGAATGTGGAGCTATGCAG
GCTCACGGAGCAGGTTGTTTTCTCGGACCCCTACAAAGTATCTAAGTTTA
ACCATTGGACTTCTCCTTATCTTGATCGTGACGCTGAGGCTGTTCGGGAG
GATAATACATTAAAGCTGGAAGAAGCTGGGATGAAATCCATGTGCTGTGA
AAATAGCGCAGTCCCTGTTGC
back to top