BQ623855 | Citrus Genome Database

Overview


Name	BQ623855
Unique Name	BQ623855
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	358

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11256	contig	Csv1_Contig11256:481..838.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  179 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 242

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  191 YPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 254

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.371e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  191 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  198 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 261

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  191 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254

[Close]

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2

Query:  131 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 310
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252

The following BLAST results are available for this feature:

BLAST of BQ623855 vs. ExPASy Swiss-Prot

BLAST of BQ623855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
CB21_CUCSA	1.050e-12	57.81	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_ARATH	1.050e-12	57.81	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB21_ORYSJ	1.371e-12	56.25	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2G_SOLLC	1.790e-12	56.25	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB2D_SOLLC	1.790e-12	56.25	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB2C_SOLLC	1.790e-12	56.25	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2B_SOLLC	1.790e-12	56.25	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB2B_PINSY	1.790e-12	56.25	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB2A_SPIOL	1.790e-12	56.25	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB2A_SOLLC	1.790e-12	56.25	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00935 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00935 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623855 ID=BQ623855; Name=BQ623855; organism=Citrus sinensis; type=EST; length=358bp
CCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGAT
GGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAG
CAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAA
CCCACTCAACTTTGCACCCACTGACGAGGCAAAGGAGAAGGAGCTTGCCA
ATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAAT
GTGACAGGCAAAGGGCCATTTGAAAACCTCCTGCAACACATCTCTGACCC
ATGGCACAACACCATCGTCCAGACACTAAGTGGTAATTAATCAAAGATGG
ATTGGCCA