BQ623856

Overview
NameBQ623856
Unique NameBQ623856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 334
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 334
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_CRIGR (Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_CHICK (Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO2_BOVIN (Small ubiquitin-related modifier 2 OS=Bos taurus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
The following BLAST results are available for this feature:
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO3_BOVIN2.701e-1954.44Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SMO3L_DANRE2.701e-1954.44Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SUMO2_RAT6.017e-1952.75Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG6.017e-1952.75Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE6.017e-1952.75Small ubiquitin-related modifier 2 OS=Mus musculus... [more]
SUMO2_MACFA6.017e-1952.75Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN6.017e-1952.75Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]
SUMO2_CRIGR6.017e-1952.75Small ubiquitin-related modifier 2 OS=Cricetulus g... [more]
SUMO2_CHICK6.017e-1952.75Small ubiquitin-related modifier 2 OS=Gallus gallu... [more]
SUMO2_BOVIN6.017e-1952.75Small ubiquitin-related modifier 2 OS=Bos taurus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00936 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00936 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623856 ID=BQ623856; Name=BQ623856; organism=Citrus sinensis; type=EST; length=471bp
ATAGCGAGAGAGAGAGAGTGTGAGAGACGAAGCAGAAGAGAGAATGTCAG
GCGTCACGAACACTCCTCAAGAGGAAGATAAGAAGCCCAACGATCAATCG
GCTCACATCAATCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCTT
CAGGATCAAACGAAGCACCCAACTAAAGAAGCTTATGAATGCATACTGTG
ATAGACAATCTGTGGAGCTGAACTCAATTGCCTTCTTGTTTGATGGTCGC
CGTCTTCGAGGAGAGCAAACCCCTGATGAGCTGGAAATGGAAGATGGTGA
TGAGATTGATGCCATGCTGCACCAAACCGGAGGAATGCTGATGTTCTAAT
TATGTAATACTCGTTTGAGAGCTTATTAGTAGTATTAATGTAAAACTATT
AATGGATGGATGTAAGTTATGCAAAGGCTCAAGATTGTGTATTTGCGATC
TACACCATTATGTTTTGTGGC
back to top