BQ623857 | Citrus Genome Database

Overview


Name	BQ623857
Unique Name	BQ623857
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	375

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig8246	contig	Csv1_Contig8246:698..1071.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA1_NICPL (Catalase isozyme 1 (Fragment) OS=Nicotiana plumbaginifolia GN=CAT1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            ERYRS+ PDRQERF+ RW++ L DPR+T+E+RSIW+SYWSQAD+SLGQKLASRLNVRPSI
Sbjct:  426 ERYRSFTPDRQERFIRRWVETLSDPRITYEIRSIWISYWSQADKSLGQKLASRLNVRPSI 485

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA_AVIMR (Catalase OS=Avicennia marina PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.602e-24
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            +RYRSWAPDRQERFL RW+ AL DPR+T E+RSIWVSYWSQAD+S GQKLASRLNVRP++
Sbjct:  433 DRYRSWAPDRQERFLRRWVDALSDPRLTLEIRSIWVSYWSQADKSFGQKLASRLNVRPTM 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA3_SOYBN (Catalase-3 OS=Glycine max GN=CAT3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.602e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            ERYRSW  DRQERF+ RW+ AL DPRVTHE+RSIW+SYWSQADRSLGQK+AS LN++PSI
Sbjct:  433 ERYRSWPSDRQERFVRRWVDALSDPRVTHEIRSIWISYWSQADRSLGQKIASHLNLKPSI 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA1_SOYBN (Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.602e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            ERYRSW  DRQERF+ RW+ AL DPRVTHE+RSIW+SYWSQADRSLGQK+AS LN++PSI
Sbjct:  433 ERYRSWPSDRQERFVRRWVDALSDPRVTHEIRSIWISYWSQADRSLGQKIASHLNLKPSI 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA_SOLAP (Catalase OS=Soldanella alpina PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            ERYR++APDRQERF+ RW+ AL DPRVTHE+RSIW+SYW+QAD+SLGQKLASRLNVRP++
Sbjct:  433 ERYRTFAPDRQERFVCRWVDALSDPRVTHEIRSIWISYWTQADKSLGQKLASRLNVRPTM 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA_IPOBA (Catalase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 45/60 (75.00%), Postives = 57/60 (95.00%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            +RYRSWAPDRQ+RF+NRW+KAL +PRVTHE+RS W+SY +QADRSLGQK+ASRLN+RP++
Sbjct:  433 DRYRSWAPDRQDRFINRWVKALSEPRVTHEIRSTWISYLTQADRSLGQKVASRLNIRPTM 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA3_CUCPE (Catalase isozyme 3 OS=Cucurbita pepo GN=CAT3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.212e-23
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            +RYRSWAPDRQ+RF+ R+++AL DPRVT EVR+IW+SYWSQADRSLGQK+ASRLNVRP+I
Sbjct:  433 DRYRSWAPDRQDRFVKRFVEALSDPRVTDEVRNIWISYWSQADRSLGQKIASRLNVRPNI 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA1_RICCO (Catalase isozyme 1 OS=Ricinus communis GN=CAT1 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            ERYRSWAPDRQERFLNR +  L DPR+THE+R+IW+SYW Q D+SLGQKLA+RLNV+PSI
Sbjct:  433 ERYRSWAPDRQERFLNRLVGGLSDPRITHELRTIWISYWIQCDKSLGQKLATRLNVKPSI 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA2_CUCPE (Catalase isozyme 2 OS=Cucurbita pepo GN=CAT2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.405e-23
Identity = 44/60 (73.33%), Postives = 57/60 (95.00%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            +RYRSWAPDRQERF+NR+++AL D +VTHEVR+IW+SYW+QADRSLGQK+ASR+N RP++
Sbjct:  433 DRYRSWAPDRQERFVNRFVEALSDSKVTHEVRNIWISYWTQADRSLGQKIASRMNARPNM 492

[Close]

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Match: CATA2_RICCO (Catalase isozyme 2 OS=Ricinus communis GN=CAT2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.434e-22
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 3

Query:    3 ERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 182
            +RYRSWAPDRQERFL R + AL +PR+THE+RSIWVS+W+Q D+SLGQKLASRLNVRP+I
Sbjct:  433 DRYRSWAPDRQERFLCRLVNALSEPRITHEIRSIWVSWWTQCDKSLGQKLASRLNVRPNI 492

The following BLAST results are available for this feature:

BLAST of BQ623857 vs. ExPASy Swiss-Prot

BLAST of BQ623857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
CATA1_NICPL	5.821e-24	78.33	Catalase isozyme 1 (Fragment) OS=Nicotiana plumbag...	[more]
CATA_AVIMR	7.602e-24	80.00	Catalase OS=Avicennia marina PE=2 SV=1	[more]
CATA3_SOYBN	7.602e-24	78.33	Catalase-3 OS=Glycine max GN=CAT3 PE=2 SV=1	[more]
CATA1_SOYBN	7.602e-24	78.33	Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1	[more]
CATA_SOLAP	1.297e-23	78.33	Catalase OS=Soldanella alpina PE=2 SV=1	[more]
CATA_IPOBA	1.297e-23	75.00	Catalase OS=Ipomoea batatas PE=2 SV=1	[more]
CATA3_CUCPE	2.212e-23	78.33	Catalase isozyme 3 OS=Cucurbita pepo GN=CAT3 PE=2 ...	[more]
CATA1_RICCO	6.436e-23	76.67	Catalase isozyme 1 OS=Ricinus communis GN=CAT1 PE=...	[more]
CATA2_CUCPE	8.405e-23	73.33	Catalase isozyme 2 OS=Cucurbita pepo GN=CAT2 PE=2 ...	[more]
CATA2_RICCO	1.434e-22	76.67	Catalase isozyme 2 OS=Ricinus communis GN=CAT2 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00937 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00937 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623857 ID=BQ623857; Name=BQ623857; organism=Citrus sinensis; type=EST; length=375bp
GAGAGAGATACCGATCCTGGGCCCCAGACAGGCAAGAGAGGTTCCTTAAT
CGATGGATTAAGGCTTTATGTGACCCACGTGTCACCCATGAGGTTCGCAG
CATATGGGTCTCTTACTGGTCTCAGGCCGACAGATCTCTGGGTCAGAAGC
TAGCTTCTCGTCTCAATGTGAGGCCAAGCATTTGAAGGTGTCACTTGAAC
TGGAACACTGGATGCTTTTGACTTGCCAAGAGTGAGCAAGGAGTGAACAC
CAAGGGTGCAGCATATGTGAAGAATTTCGATCCTATGTTTGCTGTTGTAT
ATTGTAATATAGAAAATAAACTTGCATGTTATGTGACTCTTTTCCTGTTG
TTTCAATTAATAAAAGTCTGTTTTA