BQ623864 | Citrus Genome Database

Overview


Name	BQ623864
Unique Name	BQ623864
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	399

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.986e-20
Identity = 50/89 (56.18%), Postives = 55/89 (61.80%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLA      F        +G +  L   L  P          +LCP K
Sbjct:  168 AGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   72 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

HSP 2 Score: 91.6633 bits (226), Expect = 1.254e-18
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:   28 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 89.7373 bits (221), Expect = 4.767e-18
Identity = 48/89 (53.93%), Postives = 51/89 (57.30%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLA      F        +G +  L   L  P             P K
Sbjct:  179 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 93.2041 bits (230), Expect = 4.311e-19
Identity = 50/89 (56.18%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  179 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 91.2781 bits (225), Expect = 1.638e-18
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  179 AGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  225 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

HSP 2 Score: 92.4337 bits (228), Expect = 7.354e-19
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLA      F        +G +  L   L  P             P K
Sbjct:  181 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  222 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 91.6633 bits (226), Expect = 1.254e-18
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  178 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 93.5893 bits (231), Expect = 3.301e-19
Identity = 50/89 (56.18%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  179 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  221 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  177 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  221 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 49/89 (55.06%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLA      F        +G +  L   L  P             P K
Sbjct:  177 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of BQ623864 vs. ExPASy Swiss-Prot

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68


Match Name	E-value	Identity	Description
CB22_SOYBN	2.986e-20	56.18	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2D_SOLLC	2.997e-20	97.78	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB25_TOBAC	2.997e-20	97.78	Chlorophyll a-b binding protein 50, chloroplastic ...	[more]
CB25_PETSP	2.997e-20	97.78	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB23_PETSP	2.997e-20	97.78	Chlorophyll a-b binding protein 22R, chloroplastic...	[more]
CB22_PEA	2.997e-20	97.78	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB21_TOBAC	2.997e-20	97.78	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB2G_SOLLC	3.915e-20	97.78	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB2C_SOLLC	3.915e-20	97.78	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2B_SOLLC	3.915e-20	97.78	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00944 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00944 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623864 ID=BQ623864; Name=BQ623864; organism=Citrus sinensis; type=EST; length=399bp
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCGTATGTTCTCCATGTTTGG
TTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGG
CCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACC
AACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGA
AATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGC
AAAACATGTGAATTATGTAATGTACTGCTACTACCAGTTTGAGGGGATT