BQ623864

Overview
NameBQ623864
Unique NameBQ623864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.827e-16
Identity = 42/87 (48.28%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPR 264
            GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLA    + F        +G +  L   L  P +        +  P+
Sbjct:  187 GGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273          
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.939e-16
Identity = 44/86 (51.16%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCP 261
            GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA      F        +G V+ L   L  P          +  P
Sbjct:  166 GGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.053e-15
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 2
Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 232
            M ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  233 MLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          

HSP 2 Score: 49.6766 bits (117), Expect = 1.053e-15
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   13 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLA 132
            LG   DP YPGG  F+PLG   D ++  ELK+KEIKNGRLA
Sbjct:  192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLA 232          
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.214e-15
Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRP 219
            GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA      F        +G ++ L   L  P
Sbjct:  169 GGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240          

HSP 2 Score: 73.559 bits (179), Expect = 3.549e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 2
Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 262
            MFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  212 MFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.176e-14
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLG 213
            A GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLA      F       R+  +  L   LG
Sbjct:  181 ARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLG 250          

HSP 2 Score: 65.855 bits (159), Expect = 7.400e-11
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 265
            MFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  224 MFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.989e-13
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   37 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWF 153
            YPGG+FDPLG + DP  F ELK+KEIKNGRLA +  V F
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205          

HSP 2 Score: 38.891 bits (89), Expect = 1.989e-13
Identity = 20/34 (58.82%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  134 MFSMFGFFVQ-AIVTGKGPLENLADHLADPVNNN 232
            M +  GF VQ +   G GPLENLA HLADP +NN
Sbjct:  199 MLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.356e-13
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   37 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWF 153
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA +  V F
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGF 206          

HSP 2 Score: 38.1206 bits (87), Expect = 3.356e-13
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 2
Query:  134 MFSMFGFFVQ-AIVTGKGPLENLADHLADPVNNN 232
            + ++ GF VQ +   G GPLENLA HLADP +NN
Sbjct:  200 LLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 37/64 (57.81%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   28 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRP 219
            D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLA    + F        +G V+ L   L  P
Sbjct:  174 DTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          

HSP 2 Score: 69.3218 bits (168), Expect = 6.693e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 265
            MFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  209 MFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
The following BLAST results are available for this feature:
BLAST of BQ623864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB2_DUNSA5.827e-1648.28Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE9.939e-1651.16Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB13_SOLLC1.053e-1566.67Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2_CHLMO2.214e-1558.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO4.176e-1460.56Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB121_HORVU1.989e-1366.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.356e-1369.23Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2_DUNTE5.105e-1257.81Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00944 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00944 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623864 ID=BQ623864; Name=BQ623864; organism=Citrus sinensis; type=EST; length=399bp
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCGTATGTTCTCCATGTTTGG
TTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGG
CCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACC
AACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGA
AATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGC
AAAACATGTGAATTATGTAATGTACTGCTACTACCAGTTTGAGGGGATT
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