BQ623865

Overview
NameBQ623865
Unique NameBQ623865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.658e-50
Identity = 96/151 (63.58%), Postives = 116/151 (76.82%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IK V VGDGAVGKTC+LISYTSN+FPT+YVPTVFDN+SANV+VD  TV+LGLWDTAGQEDY+RLRPLSY   DVFL+ F++IS+ SY N+  KW PE+ H+ P   I+LVGTK DLREDK+ L  +      P+T  QGE++ K I A  Y
Sbjct:    4 IKLVVVGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCTIILVGTKCDLREDKESLEKLREKHQQPLTFQQGEQMAKEIKAFCY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.658e-50
Identity = 94/151 (62.25%), Postives = 116/151 (76.82%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS++S AS+EN++ KW PE+ H+AP VPI+LVGTK D+RED+  Q  +      P++  QG    K I A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC1_CAEEL (Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.820e-48
Identity = 91/151 (60.26%), Postives = 113/151 (74.83%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ F+L + AS+EN+  KW PE+ H+ P  PI+LVGTK DLRED+  +  +      P++  QG  + K I A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTVERLRERRLQPVSQTQGYVMAKEIKAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 90/153 (58.82%), Postives = 115/153 (75.16%), Query Frame = 1
Query:  268 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            R +K V VGDGAVGKTCMLISYT+N FP +Y+PTVF+N+++++VVD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS+I+ ASYEN+  KW PE+  + P VPI+LVGTK D+R+D + +  +      PI   QG+EL K IGA  Y
Sbjct:    2 RPVKLVIVGDGAVGKTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRLAEKNIVPIQPPQGDELAKKIGAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RACF1_DICDI (Rho-related protein racF1 OS=Dictyostelium discoideum GN=racF1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.906e-46
Identity = 82/119 (68.91%), Postives = 103/119 (86.55%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 630
            IKCV VGDGAVGKTCMLISYT+N FP++Y+PTVFDN+ AN++++G   +LGLWDTAGQEDY+RLRPLSY   DVFL+ FS+IS+AS+EN++ KW  E+ H+AP VPI+LVGTKQD+R D
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYIPTVFDNYCANLMLEGKPYSLGLWDTAGQEDYDRLRPLSYPHTDVFLICFSIISQASFENVTTKWFKEVNHHAPGVPIILVGTKQDIRND 122          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RACF2_DICDI (Rho-related protein racF2 OS=Dictyostelium discoideum GN=racF2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.795e-46
Identity = 83/119 (69.75%), Postives = 103/119 (86.55%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 630
            IKCV VGDGAVGKTCMLISYT+N FP++Y+PTVFDN+ AN+++DG   +LGLWDTAGQE+Y+RLRPLSY   DVFL+ FS+IS++S+EN+S KW  E+ H+AP VPIVLVGTKQD+R D
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYLPTVFDNYCANLMLDGKPYSLGLWDTAGQEEYDRLRPLSYPQTDVFLICFSIISQSSFENVSTKWFKEVNHHAPGVPIVLVGTKQDIRND 122          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 88/151 (58.28%), Postives = 112/151 (74.17%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LISYT++ FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+IS AS+EN+ +KW PE+ H+ P VPI++VGT+ DLR D   L  ++    +PIT  QGE+L K + A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFENVKEKWFPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPITQEQGEKLAKELRAVKY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 90/151 (59.60%), Postives = 108/151 (71.52%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LI YT+N FP +Y+PTVFDN+SA   VDG TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYEN+  KW PE+ H+ P VPI+LVGTK+DLR     L  +   G  PIT  QG+ L K I A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 90/151 (59.60%), Postives = 108/151 (71.52%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LI YT+N FP +Y+PTVFDN+SA   VDG TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYEN+  KW PE+ H+ P VPI+LVGTK+DLR     L  +   G  PIT  QG+ L K I A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 90/151 (59.60%), Postives = 108/151 (71.52%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            IKCV VGDGAVGKTC+LI YT+N FP +Y+PTVFDN+SA   VDG TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYEN+  KW PE+ H+ P VPI+LVGTK+DLR     L  +   G  PIT  QG+ L K I A  Y
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRY 154          
The following BLAST results are available for this feature:
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACB_DICDI5.658e-5063.58Rho-related protein racB OS=Dictyostelium discoide... [more]
RAC1B_DICDI5.658e-5062.25Rho-related protein rac1B OS=Dictyostelium discoid... [more]
RAC1_CAEEL1.820e-4860.26Ras-related protein ced-10 OS=Caenorhabditis elega... [more]
RECG_ENTHI1.180e-4758.82Rho-related protein racG OS=Entamoeba histolytica ... [more]
RACF1_DICDI2.906e-4668.91Rho-related protein racF1 OS=Dictyostelium discoid... [more]
RACF2_DICDI3.795e-4669.75Rho-related protein racF2 OS=Dictyostelium discoid... [more]
CDC42_CANAL4.957e-4658.28Cell division control protein 42 homolog OS=Candid... [more]
RHOG_MOUSE6.474e-4659.60Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN6.474e-4659.60Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR6.474e-4659.60Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00945 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00945 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623865 ID=BQ623865; Name=BQ623865; organism=Citrus sinensis; type=EST; length=721bp
GCAATTCGGCAATCATGGTAAAGTTAAAGAATCGTAGCTAAAGTGGGTGC
TTTAATATATAGTCACCACCTTATTAAACGCCACCTTCACCCCTCCATTT
CTGTTCAAATTTCGAAACTCAAAGGCATTCAGCTTCTGTATCTTTGGCAT
TAATTCAAGGCTTTCAACATTTTCTTCAAAGTGTATATTGCTATTGATGG
AACAGAATAAAAGAAGGTGATAAGGAAAAAAAGGAGCTAGGATTCATCGA
AAATGATGAACACAGCTAGATTCATCAAATGTGTCACCGTCGGCGATGGA
GCTGTTGGCAAAACCTGCATGCTGATCTCTTATACAAGCAACACATTCCC
AACTGATTATGTGCCGACTGTGTTCGACAACTTCAGTGCTAACGTGGTGG
TTGATGGCAGCACAGTTAATCTCGGTCTATGGGATACTGCTGGACAGGAG
GATTACAACAGGCTTAGGCCTTTGAGTTACAGAGGTGCTGATGTGTTCTT
GTTGGCCTTTTCTCTCATCAGCAAAGCCAGCTATGAAAATATTTCAAAGA
AGTGGATCCCTGAGCTAAGGCATTATGCCCCAACTGTACCCATCGTCCTT
GTCGGAACAAAGCAGGATTTACGCGAGGACAAGCAGTACTTGATTAATCA
TCCAGGTGCTACGCCAATCACAACTGCTCAAGGGGAAGAATTGAAGAAGT
TGATTGGTGCTGCTGTTTACA
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