BQ623865

Overview
NameBQ623865
Unique NameBQ623865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOA_HUMAN (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+  +  +      P+   +G ++   IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOA_BOVIN (Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+  +  +      P+   +G ++   IGA  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = 1
Query:  274 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            +K V VGDGAVGKT +LI YT+  FP DYVPTVFDNF+   + D   VNL LWDTAGQEDY+ LRPLSY   DVF++ +S++ + S +NI  KW+PE+       PI+LVGTK DLREDK+ L  +      P++  +G  L K IGA  +
Sbjct:    9 VKVVVVGDGAVGKTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLDNIKYKWLPEINQTNQGTPIILVGTKTDLREDKKTLSQLQESKQEPVSRDEGVALAKEIGAVQF 159          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOC_PONAB (Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 77/150 (51.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+  +  +      P+ + +G ++   I A  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 77/150 (51.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+  +  +      P+ + +G ++   I A  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOC_HUMAN (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 77/150 (51.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+  +  +      P+ + +G ++   I A  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 77/150 (51.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK--QYLINHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+  +  +      P+ + +G ++   I A  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 77/150 (51.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D   +  +      P+   +G  + + I A  Y
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAY 156          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHO1_ASHGO (GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 81/161 (50.31%), Postives = 105/161 (65.22%), Query Frame = 1
Query:  244 SSKMMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY 720
            S +M N +   K V VGDGA GKTC+LI +    FP  YVPTVFDN+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V L+ +S+    S EN+ +KWI E+ ++   VPI+LVG K DLR D Q +  +   G  P++ AQ +E+   IGA  Y
Sbjct:    2 SQQMHNPSIRRKLVIVGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLYFCQGVPIILVGCKADLRNDPQVIEQLRQQGQQPVSQAQAQEVADQIGAVEY 162          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 1
Query:  277 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 633
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S ENI +KW PE+RH+ P VPI+LVG K+DLR D+
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLRNDE 125          
The following BLAST results are available for this feature:
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOA_HUMAN1.708e-3852.00Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
RHOA_BOVIN1.708e-3852.00Transforming protein RhoA OS=Bos taurus GN=RHOA PE... [more]
RACD_DICDI1.708e-3852.32Rho-related protein racD OS=Dictyostelium discoide... [more]
RHOC_PONAB2.913e-3851.33Rho-related GTP-binding protein RhoC OS=Pongo abel... [more]
RHOC_MOUSE2.913e-3851.33Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]
RHOC_HUMAN2.913e-3851.33Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
RHOC_BOVIN2.913e-3851.33Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHO1_DROME4.969e-3851.33Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]
RHO1_ASHGO4.969e-3850.31GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO... [more]
RHO_APLCA6.489e-3861.34Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00945 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00945 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623865 ID=BQ623865; Name=BQ623865; organism=Citrus sinensis; type=EST; length=721bp
GCAATTCGGCAATCATGGTAAAGTTAAAGAATCGTAGCTAAAGTGGGTGC
TTTAATATATAGTCACCACCTTATTAAACGCCACCTTCACCCCTCCATTT
CTGTTCAAATTTCGAAACTCAAAGGCATTCAGCTTCTGTATCTTTGGCAT
TAATTCAAGGCTTTCAACATTTTCTTCAAAGTGTATATTGCTATTGATGG
AACAGAATAAAAGAAGGTGATAAGGAAAAAAAGGAGCTAGGATTCATCGA
AAATGATGAACACAGCTAGATTCATCAAATGTGTCACCGTCGGCGATGGA
GCTGTTGGCAAAACCTGCATGCTGATCTCTTATACAAGCAACACATTCCC
AACTGATTATGTGCCGACTGTGTTCGACAACTTCAGTGCTAACGTGGTGG
TTGATGGCAGCACAGTTAATCTCGGTCTATGGGATACTGCTGGACAGGAG
GATTACAACAGGCTTAGGCCTTTGAGTTACAGAGGTGCTGATGTGTTCTT
GTTGGCCTTTTCTCTCATCAGCAAAGCCAGCTATGAAAATATTTCAAAGA
AGTGGATCCCTGAGCTAAGGCATTATGCCCCAACTGTACCCATCGTCCTT
GTCGGAACAAAGCAGGATTTACGCGAGGACAAGCAGTACTTGATTAATCA
TCCAGGTGCTACGCCAATCACAACTGCTCAAGGGGAAGAATTGAAGAAGT
TGATTGGTGCTGCTGTTTACA
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