BQ623867

Overview
NameBQ623867
Unique NameBQ623867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:711..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 1.010e-113
Identity = 199/214 (92.99%), Postives = 208/214 (97.20%), Query Frame = 2
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHESL EALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTV 421          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 2.939e-113
Identity = 198/214 (92.52%), Postives = 207/214 (96.73%), Query Frame = 2
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQINEPKRP+DKPL LPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVE+HHESL EALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQINEPKRPSDKPLHLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEVHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTV 421          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 6.547e-113
Identity = 195/214 (91.12%), Postives = 208/214 (97.20%), Query Frame = 2
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLL+ALD INEPKRP+DKPLRLPLQDVYKIGGIG VPVGRVETGV+KPGM+VTF P+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGIVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTV 421          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 9.455e-112
Identity = 194/214 (90.65%), Postives = 206/214 (96.26%), Query Frame = 2
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLL+ALD INEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P+GLTTEVKSVEMHHE+L EALPGDNV FNVKNV+VKDLK G VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTV 421          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 349.362 bits (895), Expect = 9.498e-96
Identity = 166/214 (77.57%), Postives = 188/214 (87.85%), Query Frame = 2
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            + WYKGPTLLEALD +  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG VVTF P+ +TTEVKS+EMHHE L EA PGDNVGFNVKNVSVKD++RG V  N+K+DP K A++FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KFAEI +KIDRRSGKELEK PK +K+GDA  V+M+P KPM VE F++Y PLGRFAVRDMRQTV
Sbjct:  208 MPWYKGPTLLEALDMLEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTV 421          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.340e-94
Identity = 163/212 (76.89%), Postives = 186/212 (87.74%), Query Frame = 2
Query:    8 WYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            WYKGP LLEALD  + PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTF PSGL+TEVKSVEMHHE+L +A PGDNVGFNVKNVSVKDLKRGYV  +SK+DP KG ++F +QVII+NHPG+I  GYAPVLDCHT+HIA KF+E++ K+DRRSGK+LE  PK +K+GDA  VKM+ +KPM VE F+ YPPLGRFAVRDMRQTV
Sbjct:  214 WYKGPCLLEALDACDPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPSGLSTEVKSVEMHHEALTQAGPGDNVGFNVKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTV 425          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.056e-94
Identity = 162/209 (77.51%), Postives = 187/209 (89.47%), Query Frame = 2
Query:   17 GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            G TLLEA+D I +PKRPTDKPLRLPLQDVYKIGGIGTVPVGR+ETGVLKPGMVVTF PS +TTEVKSVEMHHE L + +PGDNVGFNVKNVSVKD++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTV
Sbjct:  224 GKTLLEAIDAIEQPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTV 432          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.056e-94
Identity = 162/212 (76.42%), Postives = 187/212 (88.21%), Query Frame = 2
Query:    8 WYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            WYKGP LLEALD  + PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTF PSGL+TEVKSVEMHHE+L +A PGDNVGFNVKNVSVKDLKRGYV  +SK+DP KG ++F +QVII+NHPG+I  GYAPVLDCHT+HIA KF+E++ K+DRRSGK+LE  PK +K+GDA  VKM+ +KPM VE F++YPPLGRFAVRDMRQTV
Sbjct:  214 WYKGPCLLEALDNCDPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGLIKPGMVVTFAPSGLSTEVKSVEMHHEALPQAGPGDNVGFNVKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTV 425          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 5.212e-94
Identity = 166/209 (79.43%), Postives = 184/209 (88.04%), Query Frame = 2
Query:   17 GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            G TLLEALD I  P RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P  LTTEVKSVEMHHESL EA+PGDNVGFN+KNVSVK+++RGYVA +SK+DP K A++F +QVII+NHPGQI  GYAPVLDCHT+HIA KF E++ KIDRRSGK+LE  PKF+K+GDA  VK+IP KPMVVE FS YPPLGRFAVRDMRQTV
Sbjct:  225 GTTLLEALDAILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPPNLTTEVKSVEMHHESLPEAVPGDNVGFNIKNVSVKEIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTV 433          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 5.212e-94
Identity = 162/209 (77.51%), Postives = 186/209 (89.00%), Query Frame = 2
Query:   17 GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            G TLLEA+D I  PKRPTDKPLRLPLQDVYKIGGIGTVPVGR+ETGVLKPGMVVTF PS +TTEVKSVEMHHE L + +PGDNVGFNVKNVSVKD++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTV
Sbjct:  224 GKTLLEAIDAIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTV 432          
The following BLAST results are available for this feature:
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_WHEAT1.010e-11392.99Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A1_HORVU2.939e-11392.52Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_VICFA6.547e-11391.12Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA9.455e-11290.65Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_TRYBB9.498e-9677.57Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1AC_PORPU2.340e-9476.89Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_SORMA3.056e-9477.51Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PORYE3.056e-9476.42Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_ORYLA5.212e-9479.43Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_NEUCR5.212e-9477.51Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00947 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00947 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623867 ID=BQ623867; Name=BQ623867; organism=Citrus sinensis; type=EST; length=644bp
CCTTGACTGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCA
ATGAACCCAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGAT
GTCTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAAC
TGGTGTACTCAAGCCCGGTATGGTAGTCACATTCGGTCCGTCTGGATTGA
CTACGGAAGTTAAGTCGGTTGAGATGCACCATGAGTCTCTCCAGGAGGCA
CTTCCTGGTGATAATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGA
TCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGG
GGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAG
ATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGC
TGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGG
AGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTT
AAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCC
CCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCG
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