BQ623867

Overview
NameBQ623867
Unique NameBQ623867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 65/212 (30.66%), Postives = 98/212 (46.23%), Query Frame = 2
Query:   26 LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLG-RFAVRDMRQTV 643
            LL A D  I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G  V     G+    KS    VEM  + L +   GDN+G  ++ V   D++RG V +  K         F ++V +++   + G  + P    +      +  +I   I    G E+      +  GD     +    P+ +E       LG RFA+R+  +TV
Sbjct:  195 LLAACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEI--VGIKDTTKSTCTGVEMFRKLLDQGQAGDNIGALLRGVKRDDVERGQVLAAPKS--ITPHRKFKAEVYVLSK--EEGGRHTPFFSGYRPQFYFRTTDITGVITLEEGVEM------VMPGDNATFNVELIAPIAME-------LGLRFAIREGGRTV 387          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 65/212 (30.66%), Postives = 98/212 (46.23%), Query Frame = 2
Query:   26 LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLG-RFAVRDMRQTV 643
            LL A D  I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G  V     G+    KS    VEM  + L +   GDN+G  ++ V   D++RG V +  K         F ++V +++   + G  + P    +      +  +I   I    G E+      +  GD     +    P+ +E       LG RFA+R+  +TV
Sbjct:  195 LLAACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEI--VGIKDTTKSTCTGVEMFRKLLDQGQAGDNIGALLRGVKRDDVERGQVLAAPKS--ITPHRKFKAEVYVLSK--EEGGRHTPFFSGYRPQFYFRTTDITGVITLEEGVEM------VMPGDNATFNVELIAPIAME-------LGLRFAIREGGRTV 387          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU_DEIRA (Elongation factor Tu OS=Deinococcus radiodurans GN=tufA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 68/217 (31.34%), Postives = 101/217 (46.54%), Query Frame = 2
Query:   26 LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT----TEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMN------HPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LL+A+D  I  P+R TDK   +P++DV+ I G GTV  GRVE G +K    V     GLT    T V  +EMH + L   + GDNVG  ++ V+  D++RG V   +K    K  + F + V +++      H    G GY P     T+             D     EL++  + +  GD     +   KP+ +E         RFA+R+  +TV
Sbjct:  203 LLDAVDSYIPTPERDTDKTFLMPVEDVFTITGRGTVATGRVERGTVKVQDEVEI--VGLTDTRKTTVTGIEMHRKLLDSGMAGDNVGVLLRGVARDDVERGQVL--AKPGSIKPHTKFEASVYVLSKDEGGRHSAFFG-GYRPQFYFRTT-------------DVTGVVELQEGVEMVMPGDNVTFTVELIKPIAMEEGL------RFAIREGGRTV 395          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 2
Query:   26 LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV-----KSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEL 505
            L+EA+D  I  P+R TD+P  +P++DV+ I G GTV  GRVE GVL  G  V     G+  E+       +EM  + L EA+ GDN+G  ++ +   +++RG V   +K         F  QV ++    + G  + P  + +      +  ++   I+   G E+
Sbjct:  194 LMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTGDEVEL--IGMKEEITKTVCTGIEMFRKILDEAMAGDNIGALLRGIQRDEIQRGQVL--AKPGSITPHKKFVGQVYVLKK--EEGGRHTPFFNGYRPQFYFRTTDVTGSINLPEGVEM 353          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU_CARRP (Elongation factor Tu OS=Carsonella ruddii (strain PV) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 2
Query:   26 LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMN 388
            LLE LD+ I  P R  DKP  +P++DV+ I G GTV  G++E G++K G    +V F  + + T V  +EM  ++L E   G+NVG  ++++  ++++RG V    K    K  +NF  +V I++
Sbjct:  195 LLEILDKNIPVPNRIIDKPFLMPIEDVFSISGRGTVVTGKIERGIIKTGEEIEIVGFKET-IKTIVIGIEMFKKTLDEGFAGENVGILLRSIKREEVERGQVL--IKSGTIKPHTNFICEVYILS 316          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU_BRELN (Elongation factor Tu OS=Brevibacterium linens GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 2
Query:   41 DQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMN 388
            D + EP+R  DKP  +P++DV+ I G GTV  GRVE GVL P     +V        T V ++EM  ++L +A  G+NVG  ++    +D++RG V    K       + F +QV I++
Sbjct:  200 DNVPEPERDVDKPFLMPVEDVFTITGRGTVVTGRVERGVLLPNDEIEIVGIKEKSSKTTVTAIEMFRKTLPDARAGENVGLLLRGTKREDVERGQVI--VKPGSITPHTKFEAQVYILS 316          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 2
Query:   26 LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEL 505
            L+EA+D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L E   GDN+G  ++ +  ++++RG V   +K       + F ++V ++    + G  + P  + +      +  ++   +    G E+
Sbjct:  194 LMEAVDAYIPTPQRATDKPFLMPVEDVFSISGRGTVATGRVERGIVKVGEEVEVVGLKATAKTVVTGVEMFRKLLDEGRAGDNIGALLRGLKREEVERGQVL--AKPGSITPHTKFKAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGSVQLPQGVEM 352          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU2_SHISS (Elongation factor Tu 2 OS=Shigella sonnei (strain Ss046) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 62/205 (30.24%), Postives = 99/205 (48.29%), Query Frame = 2
Query:   47 INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPT--KPMVVETFSEYPPLGRFAVRDMRQTV 643
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    K  + F S+V I++     G  + P    +      +  ++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDN--IKMVVTLIHPIAMDDGL------RFAIREGGRTV 384          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU2_SHIF8 (Elongation factor Tu 2 OS=Shigella flexneri serotype 5b (strain 8401) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 62/205 (30.24%), Postives = 99/205 (48.29%), Query Frame = 2
Query:   47 INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPT--KPMVVETFSEYPPLGRFAVRDMRQTV 643
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    K  + F S+V I++     G  + P    +      +  ++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDN--IKMVVTLIHPIAMDDGL------RFAIREGGRTV 384          
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESR (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-7) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   26 LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEL 505
            L EALD  I EP+R  DKP  +P++DV+ I G GTV  GRVE G+++ G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   SK       + F S+V +++   + G  + P    +      +  ++   I+   G E+
Sbjct:  192 LAEALDSYIPEPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGIVRVGDEVEIVGIRTTTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVL--SKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
The following BLAST results are available for this feature:
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESVV1.716e-1230.66Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH1.716e-1230.66Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_DEIRA1.716e-1231.34Elongation factor Tu OS=Deinococcus radiodurans GN... [more]
EFTU_CLOBM1.716e-1230.12Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CARRP1.716e-1236.00Elongation factor Tu OS=Carsonella ruddii (strain ... [more]
EFTU_BRELN1.716e-1236.13Elongation factor Tu OS=Brevibacterium linens GN=t... [more]
EFTU_ANADE1.716e-1230.06Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
EFTU2_SHISS1.716e-1230.24Elongation factor Tu 2 OS=Shigella sonnei (strain ... [more]
EFTU2_SHIF81.716e-1230.24Elongation factor Tu 2 OS=Shigella flexneri seroty... [more]
EFTU2_SHESR1.716e-1231.29Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00947 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00947 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623867 ID=BQ623867; Name=BQ623867; organism=Citrus sinensis; type=EST; length=644bp
CCTTGACTGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCA
ATGAACCCAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGAT
GTCTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAAC
TGGTGTACTCAAGCCCGGTATGGTAGTCACATTCGGTCCGTCTGGATTGA
CTACGGAAGTTAAGTCGGTTGAGATGCACCATGAGTCTCTCCAGGAGGCA
CTTCCTGGTGATAATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGA
TCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGG
GGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAG
ATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGC
TGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGG
AGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTT
AAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCC
CCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCG
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