BQ623877

Overview
NameBQ623877
Unique NameBQ623877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3285 contig Csv1_Contig3285:54..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIA1B_MOUSE (E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 82/219 (37.44%), Postives = 126/219 (57.53%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            ++ +  L ECPVC + + PPI QC +GH +CS C+P++   CPTCR  LG+IR LA+EKVA S+  PCKY + GC    P+  K +HE  C FRPY+CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   +++N++Y LE+ G+ R+++W+  PRSI +
Sbjct:   32 NNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAVEKVANSVLFPCKYSASGCEITLPHTKKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 245          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA_DROWI (E3 ubiquitin-protein ligase sina OS=Drosophila willistoni GN=sina PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 82/220 (37.27%), Postives = 124/220 (56.36%), Query Frame = 2
Query:   11 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            +S+ +  L ECPVC + + PPI QCS+GH +C  C+ ++   CPTCR  L NIR LA+EKVA++++ PCK+  YGC     Y  K +HE  C  RPY CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   E++N+ Y LE+ GN R+++W+ +PRSI +
Sbjct:   80 MSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSKL-TCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSIHE 294          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA_DROME (E3 ubiquitin-protein ligase sina OS=Drosophila melanogaster GN=sina PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 82/220 (37.27%), Postives = 124/220 (56.36%), Query Frame = 2
Query:   11 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            +S+ +  L ECPVC + + PPI QCS+GH +C  C+ ++   CPTCR  L NIR LA+EKVA++++ PCK+  YGC     Y  K +HE  C  RPY CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   E++N+ Y LE+ GN R+++W+ +PRSI +
Sbjct:   63 MSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSKL-TCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSIHE 277          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA_DROER (E3 ubiquitin-protein ligase sina OS=Drosophila erecta GN=sina PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 82/220 (37.27%), Postives = 124/220 (56.36%), Query Frame = 2
Query:   11 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            +S+ +  L ECPVC + + PPI QCS+GH +C  C+ ++   CPTCR  L NIR LA+EKVA++++ PCK+  YGC     Y  K +HE  C  RPY CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   E++N+ Y LE+ GN R+++W+ +PRSI +
Sbjct:   63 MSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSKL-TCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSIHE 277          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA_DROVI (E3 ubiquitin-protein ligase sina OS=Drosophila virilis GN=sina PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.747e-37
Identity = 81/220 (36.82%), Postives = 124/220 (56.36%), Query Frame = 2
Query:   11 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            +S+ +  L ECPVC + + PPI QCS+GH +C  C+ ++   CPTCR  L NIR LA+E+VA++++ PCK+  YGC     Y  K +HE  C  RPY CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   E++N+ Y LE+ GN R+++W+ +PRSI +
Sbjct:   63 MSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSKL-TCCPTCRGPLANIRNLAMEEVASNVKFPCKHSGYGCTASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSIHE 277          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH2_DANRE (E3 ubiquitin-protein ligase Siah2 OS=Danio rerio GN=siah2l PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 82/220 (37.27%), Postives = 122/220 (55.45%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELG-NIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            S  +  L ECPVC + + PPI QC  GH +C+ C+ ++ + CPTCR  L  +IR LA+EKVA++L  PCKY S GC+    +  K +HE  C FRPY CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A +  +G   +++N++Y LE+ GN R+++W+  PRSI D
Sbjct:   80 SPELTALFECPVCFDYVLPPILQCQAGHLVCNQCRQKL-SCCPTCRGPLTPSIRNLAMEKVASTLPFPCKYSSAGCLLSLHHSEKPEHEEVCEFRPYTCPCPGASCKWQGSLEEVMPHLMHAHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHD 294          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINAL_DROME (Probable E3 ubiquitin-protein ligase sinah OS=Drosophila melanogaster GN=sinah PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.134e-34
Identity = 79/213 (37.09%), Postives = 108/213 (50.70%), Query Frame = 2
Query:   32 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGM-APVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRDS 664
            LLECPVC   + PPI QC  GH +CS C+ ++   CP CR  + NIR LA+EKVA+ L  PCK+  +GC     Y  K KHE  C  RPY CPY   +C+  G +  +  HL   H+ V    G+         N   +E A     V SC G++F L  E   LG     Y    R +G   ++  + Y++ +    R + WQ  PRSIR++
Sbjct:  103 LLECPVCFGYIMPPIMQCPRGHLICSTCRSKL-TICPVCRVFMTNIRSLAMEKVASKLIFPCKHSHFGCRARLSYAEKTKHEEDCECRPYFCPYPDDKCSWQGPLRDVYQHLMSSHENVITMEGNDIIFLATNVN---LEGALDWTMVQSCHGRHFLLSLEKINLGEDCQQYFTACRMIGSMKDAAEFVYNISLEAYNRTLRWQSKPRSIREN 311          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIA1_CAEEL (E3 ubiquitin-protein ligase sia-1 OS=Caenorhabditis elegans GN=sia-1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.346e-34
Identity = 79/222 (35.59%), Postives = 119/222 (53.60%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ----LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            S+ +  + ECPVCL  M PP  QCS+GH +CS C+P++   CPTCR    ++R L LEK+A ++  PCK+ + GC   + +  K +HE  C FRPY CP  G+ C   G +  ++ HLK  HK +    G          N P  V+   W++ + SCF   F L  E  +         ++ A ++ +G   E+ N+ Y LE+  + R+MSW+  PRSI +
Sbjct:   81 SAEILSVFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQC-CPTCRGPTPSVRNLGLEKIANTVRFPCKFSTSGCPLNFHHADKTEHEELCEFRPYCCPCPGASCKWQGGLSDVMEHLKKIHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFDYNFMLVLEKQEKYDPAQPTQMFYAVVQLIGSKKEADNFVYRLELSASRRRMSWEATPRSIHE 297          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH2_RAT (E3 ubiquitin-protein ligase SIAH2 OS=Rattus norvegicus GN=Siah2 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 78/214 (36.45%), Postives = 121/214 (56.54%), Query Frame = 2
Query:   32 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELG-NIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            L ECPVC + + PPI QC  GH +C+ C+ ++ + CPTCR  L  +IR LA+EKVA+++  PCKY + GC     +  K +HE  C +RPY+CP  G+ C   G +  +++HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A +  +G   +++N++Y LE+ GN R+++W+  PRSI D
Sbjct:   78 LFECPVCFDYVLPPILQCQAGHLVCNQCRQKL-SCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHD 286          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH2_MOUSE (E3 ubiquitin-protein ligase SIAH2 OS=Mus musculus GN=Siah2 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 78/214 (36.45%), Postives = 121/214 (56.54%), Query Frame = 2
Query:   32 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELG-NIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            L ECPVC + + PPI QC  GH +C+ C+ ++ + CPTCR  L  +IR LA+EKVA+++  PCKY + GC     +  K +HE  C +RPY+CP  G+ C   G +  +++HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A +  +G   +++N++Y LE+ GN R+++W+  PRSI D
Sbjct:   78 LFECPVCFDYVLPPILQCQAGHLVCNQCRQKL-SCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHD 286          
The following BLAST results are available for this feature:
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SIA1B_MOUSE1.360e-3737.44E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus... [more]
SINA_DROWI2.319e-3737.27E3 ubiquitin-protein ligase sina OS=Drosophila wil... [more]
SINA_DROME2.319e-3737.27E3 ubiquitin-protein ligase sina OS=Drosophila mel... [more]
SINA_DROER2.319e-3737.27E3 ubiquitin-protein ligase sina OS=Drosophila ere... [more]
SINA_DROVI6.747e-3736.82E3 ubiquitin-protein ligase sina OS=Drosophila vir... [more]
SIAH2_DANRE2.400e-3437.27E3 ubiquitin-protein ligase Siah2 OS=Danio rerio G... [more]
SINAL_DROME3.134e-3437.09Probable E3 ubiquitin-protein ligase sinah OS=Dros... [more]
SIA1_CAEEL5.346e-3435.59E3 ubiquitin-protein ligase sia-1 OS=Caenorhabditi... [more]
SIAH2_RAT1.008e-3236.45E3 ubiquitin-protein ligase SIAH2 OS=Rattus norveg... [more]
SIAH2_MOUSE1.008e-3236.45E3 ubiquitin-protein ligase SIAH2 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00957 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00957 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623877 ID=BQ623877; Name=BQ623877; organism=Citrus sinensis; type=EST; length=695bp
TAACTTGACTGTCTCTAGCAGTGTTCGTGAACTCTTGGAATGTCCTGTGT
GCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCAAATGGGCACACA
TTGTGTTCTGGTTGCAAGCCTCGGGTGCACAATCGGTGTCCCACTTGCAG
GCATGAACTTGGTAACATCAGATGTCTTGCTCTGGAGAAGGTGGCTGCAT
CTCTTGAGCTTCCCTGTAAATATCAGAGTTATGGCTGCATGGGCATATAT
CCATATTACAGCAAGCTAAAACACGAATCCCAGTGCATTTTTAGGCCCTA
TAACTGCCCTTACGCTGGATCAGAATGTACAGTAATGGGTGATATTCCTT
ATCTGGTGGCCCATTTGAAAGATGATCATAAAGTTGACATGCACAATGGC
AGTACTTTCAACCATCGTTACGTCAAACAAAATCCACATGAGGTTGAGAA
TGCCACATGGATGTTAACGGTTTTCAGCTGCTTTGGTCAGTACTTCTGCC
TCCATTTTGAAGCCTTCCAGCTTGGTATGGCTCCTGTCTACATGGCATTC
TTGCGCTTTATGGGTGATGATAATGAATCGAAAAACTACAGCTACAGTCT
TGAAGTGGGTGGTAATGGAAGGAAGATGTCATGGCAAGGTGTGCCTAGAA
GCATACGGGACAGCCACAAAAAGGTCCGGGACAGTTTTGATGGAC
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