BQ623877

Overview
NameBQ623877
Unique NameBQ623877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3285 contig Csv1_Contig3285:54..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH2_HUMAN (E3 ubiquitin-protein ligase SIAH2 OS=Homo sapiens GN=SIAH2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 78/214 (36.45%), Postives = 121/214 (56.54%), Query Frame = 2
Query:   32 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELG-NIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            L ECPVC + + PPI QC  GH +C+ C+ ++ + CPTCR  L  +IR LA+EKVA+++  PCKY + GC     +  K +HE  C +RPY+CP  G+ C   G +  +++HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A +  +G   +++N++Y LE+ GN R+++W+  PRSI D
Sbjct:   77 LFECPVCFDYVLPPILQCQAGHLVCNQCRQKL-SCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHD 285          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH2_XENLA (E3 ubiquitin-protein ligase siah2 OS=Xenopus laevis GN=siah2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 78/214 (36.45%), Postives = 118/214 (55.14%), Query Frame = 2
Query:   32 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELG-NIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            L ECPVC + + PPI QC  GH +C+ C+ ++ + CPTCR  L  +IR LA+EKVA+++  PCKY S GC     +  K +HE  C +RPY+CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++  + CF  +F L  E  +       + A +  +G   +++NY+Y LE+ GN R+++W+  PRSI D
Sbjct:   66 LFECPVCFDYVLPPILQCQAGHLVCNQCRQKL-SCCPTCRASLTPSIRNLAMEKVASAVLFPCKYASTGCSLSLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLENVMQHLTHSHKSITTLQGEDIVFLATDINLPGAVD---WVMMQY-CFNHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENYAYRLELNGNRRRLTWEATPRSIHD 274          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.752e-22
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 2
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDH 379
            ++L+CP+C  A+  P+ QC NGH  CS C P++ N+CP C   +G+IRC A+E+V  S+ +PC+Y   GC     Y  +  HE  C F P +CP  G  C   G    L  H    H
Sbjct:   41 DILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQG--CNYTGSYKDLYEHYDLTH 155          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 2
Query:    5 LTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDM 391
            L+V+    ++L+CP+C   +  PI QC NGH  C+ C  +V NRCP+C   +G +RC A+EKV  +  + C    YGC     Y ++  HE  C+F P +CP    +C   G    L  H++ +HK D+
Sbjct:  101 LSVTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPIL--DCHYTGYYKDLNNHVRAEHKDDL 227          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL7_ARATH (E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 66/225 (29.33%), Postives = 106/225 (47.11%), Query Frame = 2
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKQNPHEVE-NATWMLTVFSCFGQYFCLHFEAFQLGMAP--VYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQG--VPRSIRDSHKKVRDSF 688
            E+L+CP+C  A   PI QC NGH  CS C P+++N+CP C   +G+ RC A+E V  S+ +PC     GC     Y  +L HE +C+F    CP    +C        L  H +  H ++++  +TF    +   P  V  N +  + + +   ++   H  A Q    P  VY+          E   YSY+L    +G  + +Q   V R ++ S +  +++F
Sbjct:   47 EILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACP--ALDCNYTSSYKDLYTHYRITH-MEINQINTF----ICDIPLSVRMNISKKILIRT---EHLTNHLFAVQCFREPYGVYVTVSCIAPSSPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQENF 261          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL9_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g37910 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDM 391
            ++L+CP+C  A+  PI QC NGH  C  C P++ N+CP C   +G+ R  A+E V  S+ +PC    +GC   + Y  +  HE +CIF   +CP   S C   G    L AH K  H  ++
Sbjct:   34 DILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSRSRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCP--SSVCDYTGSYKDLYAHYKLTHSTNI 152          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIL11_ARATH (E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana GN=At5g62800 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 63/235 (26.81%), Postives = 102/235 (43.40%), Query Frame = 2
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPT--CRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTFNHRY------VKQNPHEVENATW-----MLTVFSCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQG--VPRSIRDSHKKVRDSF 688
            ++L+CPVC   +  P  QC +GH +C+ C  +V N+CP   C   +GN RC A+E+V  S  +PC+   +GC     Y     HE +C +   +CP    EC   G    +  H    H   ++N +  + ++      V  N  E  +  W     +L V  CF +               VY+   R     +E K +SY L    +G  ++++   V R +  + +   DSF
Sbjct:   39 DVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPIGNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCP--NLECNYTGSYNIIYGHFMRRH---LYNSTIVSSKWGYSTVDVLINIKEKVSVLWESRQKLLFVVQCFKE------------RHGVYVTVRRIAPPASEFKKFSYRLSYSIDGHNVTYESPEVKRLLEVNSQIPDDSF 256          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL4_ARATH (E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   32 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLK-HESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTF 409
            +LECP C + +  PI QC+NGH  C  C  ++  RC  C+  +G++RC A+EKV  +  + C    YGC     Y ++L+ HE  C+F P +CP    +C  +G    L+ H +  HKV   + ++F
Sbjct:   83 VLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPI--KDCNYIGFYKDLINHFRATHKVSPGDINSF 207          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL5_ARATH (E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana GN=At1g66660 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 2
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAH 364
            ++L+CP C   +  PI+QCSNGH  CS C  +++ +C  CR  +G+IRC A+EKV  +  +PC    +GC     Y ++  HE  C F   +CP   S C  +     L +H
Sbjct:   82 DVLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPV--SNCNYVSSYSNLKSH 191          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL2_ARATH (E3 ubiquitin-protein ligase SINA-like 2 OS=Arabidopsis thaliana GN=At1g66620 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = 2
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDH 379
            +LL+CP+C +A+  PI QC NGH  CS C  ++ N+CP+C   +GN R   +E+V  ++ + C    +GC   + Y  +L HE  C F    CP     C   G    L +H   +H
Sbjct:   40 DLLDCPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEKFSYGKELIHEKDCRFALCYCP--APNCNYSGVYKDLYSHFYVNH 154          
The following BLAST results are available for this feature:
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SIAH2_HUMAN1.008e-3236.45E3 ubiquitin-protein ligase SIAH2 OS=Homo sapiens ... [more]
SIAH2_XENLA1.317e-3236.45E3 ubiquitin-protein ligase siah2 OS=Xenopus laevi... [more]
SINL6_ARATH2.752e-2239.32Putative E3 ubiquitin-protein ligase SINA-like 6 O... [more]
SIL10_ARATH1.784e-2136.43E3 ubiquitin-protein ligase SINA-like 10 OS=Arabid... [more]
SINL7_ARATH2.330e-2129.33E3 ubiquitin-protein ligase SINA-like 7 OS=Arabido... [more]
SINL9_ARATH5.190e-2137.19Putative E3 ubiquitin-protein ligase SINA-like 9 O... [more]
SIL11_ARATH1.846e-1826.81E3 ubiquitin-protein ligase SINA-like 11 OS=Arabid... [more]
SINL4_ARATH2.411e-1835.43E3 ubiquitin-protein ligase SINA-like 4 OS=Arabido... [more]
SINL5_ARATH4.112e-1836.61E3 ubiquitin-protein ligase SINA-like 5 OS=Arabido... [more]
SINL2_ARATH5.371e-1835.04E3 ubiquitin-protein ligase SINA-like 2 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00957 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00957 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623877 ID=BQ623877; Name=BQ623877; organism=Citrus sinensis; type=EST; length=695bp
TAACTTGACTGTCTCTAGCAGTGTTCGTGAACTCTTGGAATGTCCTGTGT
GCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCAAATGGGCACACA
TTGTGTTCTGGTTGCAAGCCTCGGGTGCACAATCGGTGTCCCACTTGCAG
GCATGAACTTGGTAACATCAGATGTCTTGCTCTGGAGAAGGTGGCTGCAT
CTCTTGAGCTTCCCTGTAAATATCAGAGTTATGGCTGCATGGGCATATAT
CCATATTACAGCAAGCTAAAACACGAATCCCAGTGCATTTTTAGGCCCTA
TAACTGCCCTTACGCTGGATCAGAATGTACAGTAATGGGTGATATTCCTT
ATCTGGTGGCCCATTTGAAAGATGATCATAAAGTTGACATGCACAATGGC
AGTACTTTCAACCATCGTTACGTCAAACAAAATCCACATGAGGTTGAGAA
TGCCACATGGATGTTAACGGTTTTCAGCTGCTTTGGTCAGTACTTCTGCC
TCCATTTTGAAGCCTTCCAGCTTGGTATGGCTCCTGTCTACATGGCATTC
TTGCGCTTTATGGGTGATGATAATGAATCGAAAAACTACAGCTACAGTCT
TGAAGTGGGTGGTAATGGAAGGAAGATGTCATGGCAAGGTGTGCCTAGAA
GCATACGGGACAGCCACAAAAAGGTCCGGGACAGTTTTGATGGAC
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