BQ623877

Overview
NameBQ623877
Unique NameBQ623877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3285 contig Csv1_Contig3285:54..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL3_ARATH (E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana GN=At1g66630 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = 2 
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPY--YSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVD 388
            +LL+CP+C + +  PI+QC NGH  CS C  +V  +CP C   +G  R   LEK+  ++ + C    YGC    PY   S+  HE  C F    CP    EC   G    L  H   +HK D
Sbjct:   45 DLLDCPICYHKLGAPIYQCDNGHIACSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKIPYDNESESAHERVCEFTLCYCP--EPECKYTGVYTDLYRHYHAEHKTD 164
[Close]
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINL8_ARATH (E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana GN=At5g37900 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = 2 
Query:   29 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDH 379
            ++L+CP+C   +  PI QC NGH  CS C P++ N+CP C           +E +  S+ + C    +GC   + Y  K  HE +CIF   +CP    +C   G    L  H K  H
Sbjct:   31 DILDCPICCEGLTCPIFQCENGHLACSSCCPKLRNKCPAC----------PMENILESILVTCPNDMFGCTESFLYGKKSTHEEECIFSLCSCP--SLDCEYSGRYEDLYDHYKLTH 135
The following BLAST results are available for this feature:
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SINL3_ARATH4.547e-1736.89E3 ubiquitin-protein ligase SINA-like 3 OS=Arabido... [more]
SINL8_ARATH1.463e-1533.33E3 ubiquitin-protein ligase SINA-like 8 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00957 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00957 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623877 ID=BQ623877; Name=BQ623877; organism=Citrus sinensis; type=EST; length=695bp
TAACTTGACTGTCTCTAGCAGTGTTCGTGAACTCTTGGAATGTCCTGTGT
GCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCAAATGGGCACACA
TTGTGTTCTGGTTGCAAGCCTCGGGTGCACAATCGGTGTCCCACTTGCAG
GCATGAACTTGGTAACATCAGATGTCTTGCTCTGGAGAAGGTGGCTGCAT
CTCTTGAGCTTCCCTGTAAATATCAGAGTTATGGCTGCATGGGCATATAT
CCATATTACAGCAAGCTAAAACACGAATCCCAGTGCATTTTTAGGCCCTA
TAACTGCCCTTACGCTGGATCAGAATGTACAGTAATGGGTGATATTCCTT
ATCTGGTGGCCCATTTGAAAGATGATCATAAAGTTGACATGCACAATGGC
AGTACTTTCAACCATCGTTACGTCAAACAAAATCCACATGAGGTTGAGAA
TGCCACATGGATGTTAACGGTTTTCAGCTGCTTTGGTCAGTACTTCTGCC
TCCATTTTGAAGCCTTCCAGCTTGGTATGGCTCCTGTCTACATGGCATTC
TTGCGCTTTATGGGTGATGATAATGAATCGAAAAACTACAGCTACAGTCT
TGAAGTGGGTGGTAATGGAAGGAAGATGTCATGGCAAGGTGTGCCTAGAA
GCATACGGGACAGCCACAAAAAGGTCCGGGACAGTTTTGATGGAC
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