BQ623879

Overview
NameBQ623879
Unique NameBQ623879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:47..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.888e-35
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIP+GVDVSKISMS E+ LNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPAGVDVSKISMSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          

HSP 2 Score: 62.003 bits (149), Expect = 8.888e-35
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAG P
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFP 36          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.158e-34
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIP+GVD SKISM  EDLLN PGETY+VTL+EKGTYSFYCSPHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPAGVDASKISMPEEDLLNAPGETYSVTLSEKGTYSFYCSPHQGAGMVGKVTVN 99          

HSP 2 Score: 61.6178 bits (148), Expect = 1.158e-34
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            IEVLLG DDG LAFVP +FS+S+GEKI FKNNAG P
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFP 36          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.158e-34
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DE+PSGVD +KISMS +DLLN PGETY+VTLTE GTY FYCSPHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEVPSGVDSAKISMSEDDLLNAPGETYSVTLTESGTYKFYCSPHQGAGMVGKVTVN 99          

HSP 2 Score: 63.929 bits (154), Expect = 1.158e-34
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            +E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAG P
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFP 36          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.158e-34
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIPSGVD  KISM+ EDLLN PGE Y V LTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVGKVTVN 99          

HSP 2 Score: 65.855 bits (159), Expect = 1.158e-34
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            IEVLLGGDDGSLAF+P+ FSV++GEKIVFKNNAG P
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFP 36          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.965e-34
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIP+GVD SKISMS EDLLN PGETYAVTLTEKGTYSFYC+PHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPAGVDASKISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 99          

HSP 2 Score: 57.3806 bits (137), Expect = 1.965e-34
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 2
Query:  245 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            EVLLG  DG L F PS+FSV+SGEKIVFKNNAG P
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFP 36          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.334e-34
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIPSGVD SKISM   DLLN PGETYAVTLTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 99          

HSP 2 Score: 59.6918 bits (143), Expect = 3.334e-34
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            ++VLLG DDG LAFVP++FSV SGEKI FKNNAG P
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFP 36          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.419e-34
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  LF  +DE+P GVD   ISM  EDLLN PGET++VTL EKGTYS YCSPHQGAGM G++TVN
Sbjct:  104 HNVLFD-EDEVPKGVDAGAISMKEEDLLNAPGETFSVTLKEKGTYSIYCSPHQGAGMAGKITVN 166          

HSP 2 Score: 63.5438 bits (153), Expect = 5.419e-34
Identity = 38/91 (41.76%), Postives = 49/91 (53.85%), Query Frame = 2
Query:   80 GLKAGATPARVVGSTMKASASAVPKLSIKATLKD-VGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            GLKAG  P     S    +  +    S+KA+ K+ +G                  +EVLLGG DGSLAFVPS+  V++GE +VFKNNAG P
Sbjct:   16 GLKAGRAPTTPSTSIKPPTPMS---FSVKASFKEAIGTALVATAAGAVLASNALAVEVLLGGSDGSLAFVPSNIEVAAGETVVFKNNAGFP 103          

HSP 3 Score: 25.7942 bits (55), Expect = 5.419e-34
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  342 GFPHNVVFDE 371
            GFPHNV+FDE
Sbjct:  101 GFPHNVLFDE 110          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.369e-34
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIP+GVD SKISM+ EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPAGVDASKISMAEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          

HSP 2 Score: 63.5438 bits (153), Expect = 7.369e-34
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            ++VLLGGDDGSLAF+P +FSVS+GEKI FKNNAG P
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFP 36          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.677e-34
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIPSGVD +KISM  EDLLN PGETY+V L  KGTY FYCSPHQGAGMVGQVTVN
Sbjct:   37 HNVVFD-EDEIPSGVDAAKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 99          

HSP 2 Score: 57.3806 bits (137), Expect = 9.677e-34
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            +EVLLG  DG LAFVP+SF VS+G+ IVFKNNAG P
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFP 36          

HSP 3 Score: 26.9498 bits (58), Expect = 9.677e-34
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  342 GFPHNVVFDE 371
            GFPHNVVFDE
Sbjct:   34 GFPHNVVFDE 43          
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.629e-33
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIPSGVD  KISM+ EDLL+ PG+ Y V LT+KG+YSFYCSPHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVGKVTVN 99          

HSP 2 Score: 64.6994 bits (156), Expect = 1.629e-33
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 2
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            IE+LLGGDDGSLAFVP++F+V+SGEKI FKNNAG P
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFP 36          
The following BLAST results are available for this feature:
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PLAS1_TOBAC8.888e-3576.56Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_SOLCR1.158e-3478.13Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_SAMNI1.158e-3475.00Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_CUCPE1.158e-3475.00Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_LACSA1.965e-3481.25Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_MERPE3.334e-3479.69Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_FRIAG5.419e-3468.75Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_SOLTU7.369e-3473.44Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_VICFA9.677e-3475.00Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_CUCSA1.629e-3370.31Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00959 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00959 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623879 ID=BQ623879; Name=BQ623879; organism=Citrus sinensis; type=EST; length=560bp
AAGAAAAAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCACCT
CTGCAGCTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACA
CCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCC
AAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGG
CCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTT
TTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTC
TGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGGTTCCCA
CACAACGTTGTTTTCGATGAAAGATGAGATTCCGAGTGGTGTTGATGTTT
CAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGACT
TATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTTTCTACTGTTCCCC
TCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTTAATTAAGTTCACA
TTCAGACTTT
back to top