BQ623879 | Citrus Genome Database

Overview


Name	BQ623879
Unique Name	BQ623879
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	560

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.349e-32
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIPSGVD SKISM   DLLN  GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPSGVDASKISMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTVN 99

HSP 2 Score: 62.7734 bits (151), Expect = 1.349e-32
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 2

Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            IEVLLGG DGSLAFVP+ FS++ GEKIVFKNNAG P
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFP 36

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.883e-32
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DEIP+GVD  KISM  E+LLN PGETY VTL  KGTYSFYCSPHQGAGMVG+VTVN
Sbjct:   37 HNVVFD-EDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99

HSP 2 Score: 60.4622 bits (145), Expect = 3.883e-32
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 2

Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAG P
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFP 36

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.421e-29
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +D +P+GVDVS ISMS EDLLN PGETY V L +KGTY F+C+PHQG GM G VTVN
Sbjct:   37 HNVIFD-EDAVPAGVDVSSISMSEEDLLNAPGETYVVKLDKKGTYRFFCAPHQGIGMSGIVTVN 99

HSP 2 Score: 52.7582 bits (125), Expect = 4.421e-29
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 2

Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            +EVL+GG  G LAF+P+   V++GE+IVFKNNAG P
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFP 36

HSP 3 Score: 26.5646 bits (57), Expect = 4.421e-29
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  342 GFPHNVVFDE 371
            GFPHNV+FDE
Sbjct:   34 GFPHNVIFDE 43

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.690e-26
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +D +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   94 HNVVFD-EDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154

HSP 2 Score: 47.3654 bits (111), Expect = 1.690e-26
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 2

Query:  245 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            EVLLG + G L F P+ F+V SGE I FKNNAG P
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFP 93

HSP 3 Score: 26.9498 bits (58), Expect = 1.690e-26
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  342 GFPHNVVFDE 371
            GFPHNVVFDE
Sbjct:   91 GFPHNVVFDE 100

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.690e-26
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +D +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   94 HNVVFD-EDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154

HSP 2 Score: 47.3654 bits (111), Expect = 1.690e-26
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 2

Query:  245 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            EVLLG + G L F P+ F+V SGE I FKNNAG P
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFP 93

HSP 3 Score: 26.9498 bits (58), Expect = 1.690e-26
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  342 GFPHNVVFDE 371
            GFPHNVVFDE
Sbjct:   91 GFPHNVVFDE 100

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.333e-25
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +DE+P+GV+  KIS    + LNG GETY VTLTEKGTY FYC PH GAGM G+VTVN
Sbjct:   37 HNIVFD-EDEVPAGVNAEKISQP--EYLNGAGETYEVTLTEKGTYKFYCEPHAGAGMKGEVTVN 97

HSP 2 Score: 54.6842 bits (130), Expect = 1.333e-25
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 2

Query:  245 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            EV LG DDG L F PSSF+V++GEKI FKNNAG P
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFP 36

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.735e-25
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            H  +F  +DE+P+GVDVSKIS   ED L+G GE++ VTLTEKGTY FYC PH GAGM G+VTV
Sbjct:   37 HNIVFD-EDEVPAGVDVSKISQ--EDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVTV 96

HSP 2 Score: 52.373 bits (124), Expect = 1.735e-25
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 2

Query:  245 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            EV LG DDG+L F PSSFSV+ GE I FKNNAG P
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFP 36

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.859e-25
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +D +PSGVDVSKIS   E+ L  PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   95 HNVVFD-EDAVPSGVDVSKISQ--EEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 155

HSP 2 Score: 46.2098 bits (108), Expect = 3.859e-25
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 2

Query:  245 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            +VLLG + G L F P+ FSV +GE I FKNNAG P
Sbjct:   60 DVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYP 94

HSP 3 Score: 25.7942 bits (55), Expect = 3.859e-25
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  342 GFPHNVVFDE 371
            G+PHNVVFDE
Sbjct:   92 GYPHNVVFDE 101

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.571e-22
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 540
            H  +F  +D +P+GV    I+   ED LNGP E++++T    GTY FYC PHQGAGM G VTV+
Sbjct:  108 HNVVFD-EDAVPAGVKTEDINH--EDYLNGPNESFSITFKTPGTYEFYCEPHQGAGMKGVVTVS 168

HSP 2 Score: 51.2174 bits (121), Expect = 2.571e-22
Identity = 32/92 (34.78%), Postives = 42/92 (45.65%), Query Frame = 2

Query:   80 GLKAG--ATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            GLKA   A PAR+  +++   A  V   +    LK VG                    V +GGDDG+L F P   SV++GE + F NN G P
Sbjct:   16 GLKAETKAAPARLSSTSVVRMAPVVRASASSDALKTVGKALLAASSSLLLVASANAATVKMGGDDGALGFYPKDISVAAGESVTFVNNKGFP 107

HSP 3 Score: 26.9498 bits (58), Expect = 2.571e-22
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  342 GFPHNVVFDE 371
            GFPHNVVFDE
Sbjct:  105 GFPHNVVFDE 114

[Close]

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.283e-20
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1

Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            H  +F  +D IPSGV+   IS   +D LN PGETY+V LT  G Y +YC PHQGAGMVG++ V
Sbjct:   85 HNIVFD-EDAIPSGVNADAISR--DDYLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 144

HSP 2 Score: 41.5874 bits (96), Expect = 1.283e-20
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 2

Query:  248 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            V LG D G+L FVP + ++ SGE + F NNAG P
Sbjct:   51 VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFP 84

HSP 3 Score: 26.5646 bits (57), Expect = 1.283e-20
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3

Query:  342 GFPHNVVFDE 371
            GFPHN+VFDE
Sbjct:   82 GFPHNIVFDE 91

The following BLAST results are available for this feature:

BLAST of BQ623879 vs. ExPASy Swiss-Prot

BLAST of BQ623879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37


Match Name	E-value	Identity	Description
PLAS_CAPBU	1.349e-32	73.44	Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE...	[more]
PLAS_PHAVU	3.883e-32	73.44	Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV...	[more]
PLAS_GINBI	4.421e-29	65.63	Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1	[more]
PLAS_ORYSJ	1.690e-26	65.63	Plastocyanin, chloroplastic OS=Oryza sativa subsp....	[more]
PLAS_ORYSI	1.690e-26	65.63	Plastocyanin, chloroplastic OS=Oryza sativa subsp....	[more]
PLAS_PETCR	1.333e-25	62.50	Plastocyanin A/B OS=Petroselinum crispum GN=PETE P...	[more]
PLAS_DAUCA	1.735e-25	65.08	Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1	[more]
PLAS_HORVU	3.859e-25	64.06	Plastocyanin, chloroplastic OS=Hordeum vulgare GN=...	[more]
PLAS_PHYPA	2.571e-22	50.00	Plastocyanin, chloroplastic OS=Physcomitrella pate...	[more]
PLAS_CHLRE	1.283e-20	55.56	Plastocyanin, chloroplastic OS=Chlamydomonas reinh...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00959 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00959 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623879 ID=BQ623879; Name=BQ623879; organism=Citrus sinensis; type=EST; length=560bp
AAGAAAAAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCACCT
CTGCAGCTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACA
CCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCC
AAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGG
CCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTT
TTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTC
TGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGGTTCCCA
CACAACGTTGTTTTCGATGAAAGATGAGATTCCGAGTGGTGTTGATGTTT
CAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGACT
TATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTTTCTACTGTTCCCC
TCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTTAATTAAGTTCACA
TTCAGACTTT