BQ623879

Overview
NameBQ623879
Unique NameBQ623879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_ENTPR (Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 6.747e-19
Identity = 30/63 (47.62%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            H  +F  +D +P+GVD   IS   ED LN  G+T    LT  GTY  YC PH GAGM   +TV
Sbjct:   38 HNIVFD-EDAVPAGVDADAIS--AEDYLNSKGQTVVRKLTTPGTYGVYCDPHSGAGMKMTITV 97

HSP 2 Score: 49.6766 bits (117), Expect = 6.747e-19
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 2 
Query:  248 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            V LGGDDGSLAFVP++ +V +GE I F NNAG P
Sbjct:    4 VKLGGDDGSLAFVPNNITVGAGESIEFINNAGFP 37

HSP 3 Score: 26.5646 bits (57), Expect = 6.747e-19
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  342 GFPHNVVFDE 371
            GFPHN+VFDE
Sbjct:   35 GFPHNIVFDE 44
[Close]
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_CHLFU (Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.134e-18
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            H  +F  +DE+PSG +    ++S ED LN PGE+Y+      GTY ++C PHQGAGM G +TV
Sbjct:   38 HNIVFD-EDEVPSGANAE--ALSHEDYLNAPGESYSAKFDTAGTYGYFCEPHQGAGMKGTITV 97

HSP 2 Score: 40.817 bits (94), Expect = 1.134e-18
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 2 
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            + V LG D G+L F PSS ++ +GE + + NNAG P
Sbjct:    2 VTVKLGADSGALVFEPSSVTIKAGETVTWVNNAGFP 37

HSP 3 Score: 26.5646 bits (57), Expect = 1.134e-18
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  342 GFPHNVVFDE 371
            GFPHN+VFDE
Sbjct:   35 GFPHNIVFDE 44
[Close]
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_ULVPE (Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.469e-18
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            H  +F  +D +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:   38 HNIVFD-EDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97

HSP 2 Score: 51.9878 bits (123), Expect = 2.469e-18
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 2 
Query:  248 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            V LGGDDGSLAFVPS  SV++GE I F NNAG P
Sbjct:    4 VKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFP 37

HSP 3 Score: 26.5646 bits (57), Expect = 2.469e-18
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  342 GFPHNVVFDE 371
            GFPHN+VFDE
Sbjct:   35 GFPHNIVFDE 44
[Close]
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_SCEOB (Plastocyanin, chloroplastic OS=Scenedesmus obliquus GN=PETE PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 4.995e-18
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            H  +F  +D +P+GV+    ++S +D LN PGE+Y       G Y ++C PHQGAGMVG+V V
Sbjct:   85 HNIVFD-EDAVPAGVNAD--ALSHDDYLNAPGESYTAKFDTAGEYGYFCEPHQGAGMVGKVIV 144

HSP 2 Score: 43.1282 bits (100), Expect = 4.995e-18
Identity = 26/88 (29.55%), Postives = 39/88 (44.32%), Query Frame = 2 
Query:   86 KAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            KA   PA+   +T+KASAS          L+ V                     V LG D G+L F P++ ++ +G+ + + NNAG P
Sbjct:    7 KAAVAPAKATRTTVKASAS----------LQRVAQAAGVAVAGFSLALSANAANVKLGADSGALVFEPATVTIKAGDSVTWTNNAGFP 84

HSP 3 Score: 26.5646 bits (57), Expect = 4.995e-18
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  342 GFPHNVVFDE 371
            GFPHN+VFDE
Sbjct:   82 GFPHNIVFDE 91
[Close]
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_ULVAR (Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.375e-18
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:  349 HTTLFSMKDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            H  +F  +D +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:   38 HNIVFD-EDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97

HSP 2 Score: 50.8322 bits (120), Expect = 5.375e-18
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 2 
Query:  248 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            V LGGDDG+LAFVPS  SV++GE I F NNAG P
Sbjct:    4 VKLGGDDGALAFVPSKISVAAGEAIEFVNNAGFP 37

HSP 3 Score: 26.5646 bits (57), Expect = 5.375e-18
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  342 GFPHNVVFDE 371
            GFPHN+VFDE
Sbjct:   35 GFPHNIVFDE 44
[Close]
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_SYNP6 (Plastocyanin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petE PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.462e-12
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  412 MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            +S +DL   PGET+  T +E GTY++YC PH+GAGMVG++ V
Sbjct:   83 LSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVV 124

HSP 2 Score: 32.3426 bits (72), Expect = 6.462e-12
Identity = 12/36 (33.33%), Postives = 22/36 (61.11%), Query Frame = 2 
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            + + +G D+G LAF PS+  + +G+ + + NN   P
Sbjct:   37 VAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAP 72
[Close]
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Match: PLAS_SYNE7 (Plastocyanin OS=Synechococcus elongatus (strain PCC 7942) GN=petE PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.462e-12
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  412 MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 537
            +S +DL   PGET+  T +E GTY++YC PH+GAGMVG++ V
Sbjct:   83 LSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVV 124

HSP 2 Score: 32.3426 bits (72), Expect = 6.462e-12
Identity = 12/36 (33.33%), Postives = 22/36 (61.11%), Query Frame = 2 
Query:  242 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGVP 349
            + + +G D+G LAF PS+  + +G+ + + NN   P
Sbjct:   37 VAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAP 72
The following BLAST results are available for this feature:
BLAST of BQ623879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PLAS_ENTPR6.747e-1947.62Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=... [more]
PLAS_CHLFU1.134e-1847.62Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1[more]
PLAS_ULVPE2.469e-1844.44Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1[more]
PLAS_SCEOB4.995e-1844.44Plastocyanin, chloroplastic OS=Scenedesmus obliquu... [more]
PLAS_ULVAR5.375e-1844.44Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1[more]
PLAS_SYNP66.462e-1254.76Plastocyanin OS=Synechococcus sp. (strain ATCC 271... [more]
PLAS_SYNE76.462e-1254.76Plastocyanin OS=Synechococcus elongatus (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00959 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00959 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623879 ID=BQ623879; Name=BQ623879; organism=Citrus sinensis; type=EST; length=560bp
AAGAAAAAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCACCT
CTGCAGCTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACA
CCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCC
AAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGG
CCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTT
TTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTC
TGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGGTTCCCA
CACAACGTTGTTTTCGATGAAAGATGAGATTCCGAGTGGTGTTGATGTTT
CAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGACT
TATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTTTCTACTGTTCCCC
TCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTTAATTAAGTTCACA
TTCAGACTTT
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