BQ623886

Overview
NameBQ623886
Unique NameBQ623886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623886_ssr6 microsatellite BQ623886_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:121..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.767e-22
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGFGFG 659
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+      G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 184          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.767e-22
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGFGFG 659
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+      G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 184          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.285e-21
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGFGFGGQA 668
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G G  G+A
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA-GEGPLGEA 185          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.192e-21
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT--NGFGFGGQASP 674
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G    +    + AV+  +++L+G  E +RI   +G G G    P
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYP 192          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.377e-21
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  306 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI  G
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 120          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.133e-20
Identity = 55/137 (40.15%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  249 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 647
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G    I   N+V  +  ++VL+G  E YR+  G
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGG 188          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G    +    + A+ A ++VL+G  E Y +  G
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGG 178          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  306 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNG 647
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G    +    + A+   +++L+G  E YRI  G
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARG 183          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 55/135 (40.74%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A +++L+G  E YRI  G
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 170          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  261 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 626
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAE 165          
The following BLAST results are available for this feature:
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_ARATH5.767e-2241.01Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH5.767e-2241.01Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_SINAL1.285e-2142.25Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_HORVU2.192e-2139.73Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_CUCSA6.377e-2145.30Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNSA4.133e-2040.15Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE1.018e-1840.00Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO2.268e-1843.59Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB22_SOYBN1.920e-1740.74Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB12_SOLLC1.987e-1438.52Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00966 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00966 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623886 ID=BQ623886; Name=BQ623886; organism=Citrus sinensis; type=EST; length=676bp
GAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCG
TCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCT
CAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTT
CTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCT
GCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAA
GTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACA
GATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGT
TACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCA
GGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTT
TCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAA
GCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAA
CTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTG
AGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGGTTT
GGATTTGGAGGACAAGCTTCACCCAG
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