BQ623894

Overview
NameBQ623894
Unique NameBQ623894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.405e-18
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            V +   AK+ A++SRVK F+K+VNY HLMPTRY L++D LK +++AD+ +   ++  A K  KK  EE++++GK+ WFFT LRF
Sbjct:   53 VTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.098e-17
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   22 KKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EE++KTGKN+WFF KLRF
Sbjct:   60 KKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.214e-16
Identity = 39/77 (50.65%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   22 KKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            KK  K++++K F+K+V+Y HL+PTRY++DV   K  ++ ++L++  KK  A  E K + EER+KTGKN+WFFTKLRF
Sbjct:   60 KKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.214e-16
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            V +   AK+ AK+SRVK F+K++NY HLMPTRY L++D LK +V+  +     ++  A K  K   EE+++TGK+ WFFT LRF
Sbjct:   53 VTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_DICDI (60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLD-------VDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            ++R  S K   K++ +++FVK+VNY H+MPTRY  +         LK+ V+ +S Q   K+       KK  E + K GK++WFF+KLRF
Sbjct:   56 IVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVA-KRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF 144          
The following BLAST results are available for this feature:
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27A_SCHPO8.405e-1848.8160S ribosomal protein L27-A OS=Schizosaccharomyces... [more]
RL27_CANFA1.098e-1754.5560S ribosomal protein L27 OS=Canis familiaris GN=R... [more]
RL27_CAEEL1.214e-1650.6560S ribosomal protein L27 OS=Caenorhabditis elegan... [more]
RL27B_SCHPO1.214e-1647.6260S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27_DICDI2.005e-1138.8960S ribosomal protein L27 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00974 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00974 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623894 ID=BQ623894; Name=BQ623894; organism=Citrus sinensis; type=EST; length=425bp
GTCATCCGCAAGGACTCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAA
GGCCTTCGTCAAGTTGGTCAACTACCAGCACCTGATGCCCACGCGCTACA
CTCTCGACGTCGATTTGAAGGACGTCGTGTCGGCCGATTCCCTCCAGAGC
AAGGACAAGAAGGTGACCGCTTGCAAGGAGACCAAGAAGCGCCTCGAGGA
GAGGTTTAAGACTGGCAAGAATCGTTGGTTCTTTACTAAGCTCAGGTTTT
AGATTTTTAACCAAAGGAAGAAAGCAACTTGTCGTTTTGTTTTGTTTTGT
GTTATTGAAAACGCTTTAGTTGTTAAAGTGCGAATTTTGAGATTTATGTA
GTGTTTTGTGAACTTAATTTTTTCTGGATCTGGTACTATTTTTATGTGAT
ATTATTGGGTTTATAATGTTTACTC
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