BQ623896

Overview
NameBQ623896
Unique NameBQ623896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKB1A_RABIT (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Oryctolagus cuniculus GN=FKBP1A PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  195 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            VHY G L E G+ FD++ + N  F F LGK  VIR W+  +  M VG+ AKLT  P+YAYG+ G P  +PP ATL+F+VEL+
Sbjct:   25 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKB1A_HUMAN (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  195 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            VHY G L E G+ FD++ + N  F F LGK  VIR W+  +  M VG+ AKLT  P+YAYG+ G P  +PP ATL+F+VEL+
Sbjct:   25 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP1_DICDI (FK506-binding protein 1 OS=Dictyostelium discoideum GN=fkbp1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.933e-17
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            V VH+ G+L   G VFD++ +    F+F+LG G VI+ WD  +  MKVGE +KLT  P++ YG+ G+   +PP+ATL+FEVEL+
Sbjct:   22 VTVHHAGTLTN-GTVFDSSRKRGQPFNFKLGAGQVIKGWDEGVAKMKVGETSKLTISPDFGYGARGAGGVIPPNATLVFEVELI 104          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP6_MOUSE (FK506-binding protein 6 OS=Mus musculus GN=Fkbp6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 3
Query:   99 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            +D++GD GV+K I+R+   D ++P      V V Y G L    + FD+     T    +LG+   +   ++ L SM+ GE+A+   KP YAYG+ G PP +PP+AT++FE+EL+
Sbjct:   30 LDISGDRGVLKDIIREGTGDTVTPDAS---VLVKYSGYLEHMDKPFDSNCFRKTPRLMKLGEDITLWGMELGLLSMRKGELARFLFKPAYAYGTLGCPPLIPPNATVLFEIELI 140          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP2_CRYNE (FK506-binding protein 2 OS=Cryptococcus neoformans GN=FPR2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPR 455
            + +HY G+LA+ G  FD++ + N  F F LG G VI+ WD  L  M + E  KLT     AYG  G PP +PP +TL+FEVEL+  + R
Sbjct:   48 LSMHYTGTLAKDGSKFDSSLDRNRPFEFTLGAGQVIKGWDQGLLDMCISEKRKLTIPSHLAYGERGHPPVIPPQSTLVFEVELLGIKNR 136          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP_CRYNV (FK506-binding protein 1 OS=Cryptococcus neoformans var. grubii GN=FRR1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            V +HY G+L + G  FD++ +  T F   +G+G VIR WD  +  + VG+ A L C P+YAYG+ G PP +PP++TL FEVEL+
Sbjct:   23 VTIHYVGTLLD-GSKFDSSRDRGTPFVCRIGQGQVIRGWDEGVPQLSVGQKANLICTPDYAYGARGFPPVIPPNSTLKFEVELL 105          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKB1A_RAT (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Rattus norvegicus GN=Fkbp1a PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  195 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            VHY G L E G+ FD++ + N  F F LGK  VIR W+  +  M VG+ AKL   P+YAYG+ G P  +PP ATL+F+VEL+
Sbjct:   25 VHYTGML-EDGKKFDSSRDRNKPFKFTLGKQEVIRGWEEGVAQMSVGQRAKLIISPDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP_CRYNE (FK506-binding protein 1 OS=Cryptococcus neoformans GN=FPR1 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            V +HY G+L + G  FD++ +  T F   +G+G VIR WD  +  + +G+ A L C P+YAYG+ G PP +PP++TL FEVEL+
Sbjct:   23 VTIHYVGTLLD-GSKFDSSRDRGTPFVCRIGQGQVIRGWDEGVPQLSIGQKANLICTPDYAYGARGFPPVIPPNSTLKFEVELL 105          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP2_YEAST (FK506-binding protein 2 OS=Saccharomyces cerevisiae GN=FKB2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  120 GVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            G+IK+I  +   D L        V VHY GSL E+G VFD+++   +  +FELG G VI+ WD  +  M VGE  KL      AYG  G P  +PP A L+F+VELV
Sbjct:   26 GIIKRIPVE---DCLIKAMPGDKVKVHYTGSLLESGTVFDSSYSRGSPIAFELGVGRVIKGWDQGVAGMCVGEKRKLQIPSSLAYGERGVPGVIPPSADLVFDVELV 129          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKB15_VICFA (FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSSLGSVSEE 488
            V VHY G L + G VFD++ E N+   FELG G VI+ WD  L  M +GE  KL    +  YG  GSPP +P  ATLIF+ ELV    +  S   S S E
Sbjct:   52 VKVHYRGKLTD-GTVFDSSFERNSPIDFELGGGQVIKGWDQGLLGMCLGEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELVGVNDKSLSEEKSTSSE 150          
The following BLAST results are available for this feature:
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
FKB1A_RABIT6.839e-1751.22Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Oryc... [more]
FKB1A_HUMAN6.839e-1751.22Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo... [more]
FKBP1_DICDI8.933e-1747.62FK506-binding protein 1 OS=Dictyostelium discoideu... [more]
FKBP6_MOUSE1.990e-1637.72FK506-binding protein 6 OS=Mus musculus GN=Fkbp6 P... [more]
FKBP2_CRYNE1.990e-1644.94FK506-binding protein 2 OS=Cryptococcus neoformans... [more]
FKBP_CRYNV2.599e-1646.43FK506-binding protein 1 OS=Cryptococcus neoformans... [more]
FKB1A_RAT2.599e-1650.00Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Ratt... [more]
FKBP_CRYNE3.394e-1645.24FK506-binding protein 1 OS=Cryptococcus neoformans... [more]
FKBP2_YEAST3.394e-1643.93FK506-binding protein 2 OS=Saccharomyces cerevisia... [more]
FKB15_VICFA3.394e-1646.00FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00976 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623896 ID=BQ623896; Name=BQ623896; organism=Citrus sinensis; type=EST; length=510bp
AGTCAATCGGTCAACTCGATCTCTCTTTTACGGTCGATAATTTTCATCTC
ATCACGATACGGTAGGGTTTTAAGCATTGAGAAGTTATGGGTGATTCAAT
TGATTTGACGGGTGATGAAGGTGTCATCAAGAAGATCGTAAGGCAAGCTA
AACCTGATGCTCTCTCTCCTACTGAGGACCTTCCTCTTGTTGATGTTCAT
TATGAAGGCAGTCTTGCTGAAACTGGTGAAGTTTTCGATACCACACATGA
AGACAATACTGTATTTTCTTTTGAGCTTGGGAAGGGTTCAGTGATTCGGG
CTTGGGATATTGCATTAAGAAGCATGAAGGTTGGGGAGGTTGCAAAACTC
ACTTGCAAGCCAGAATATGCCTATGGCAGTGCAGGATCTCCTCCAGATGT
CCCACCTGATGCGACACTTATTTTTGAGGTGGAGTTGGTGGCCTGCAGGC
CAAGGAAAGGTTCTAGTCTTGGTAGCGTATCGGAAGAGAGAGCCAGGCCT
AGAGGAGCTT
back to top