BQ623896

Overview
NameBQ623896
Unique NameBQ623896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8174 contig Csv1_Contig8174:397..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP6_HUMAN (FK506-binding protein 6 OS=Homo sapiens GN=FKBP6 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   99 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            +D++GD GV+K ++R+   D ++P      V V Y G L      FD+ +   T    +LG+   +   ++ L SM+ GE+A+   KP YAYG+ G PP +PP+ T++FE+EL+
Sbjct:   30 LDISGDRGVLKDVIREGAGDLVAPDAS---VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 140          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP2_EMENI (FK506-binding protein 2 OS=Emericella nidulans GN=fkbB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            V +HY G+LAE G  FD +++  T F F+LG G VI+ WD  L  M VGE   LT  PEY YG  G  P +P  ATLIF+ EL+
Sbjct:   43 VKMHYRGTLAEDGSQFDASYDRGTPFKFKLGAGRVIKGWDEGLLDMCVGEKRTLTIPPEYGYGDRGIGP-IPGGATLIFQTELL 125          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP_KLULA (FK506-binding protein 1 OS=Kluyveromyces lactis GN=FPR1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 3
Query:  132 KIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            +I+R +  D+ +  +   LV +HY G+L E G+ FD++ +  + F   +G G VI+ WD A+  + VGE A+LT    YAYG  G P  +PP+ATL+F+VEL+
Sbjct:   10 QILRLSPGDSTNFPKPGDLVTIHYTGTL-ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDAAIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNATLVFDVELL 111          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP4_DICDI (FK506-binding protein 4 OS=Dictyostelium discoideum GN=fkbp4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVAC 446
            V V Y G L   G+ FD++    T F+F +G   VIR WDI + SMKVG   +LT   + AYG +G+PP +PP+ATLIF+VELV+C
Sbjct:  280 VGVKYIGKLTN-GKTFDSSLR--TPFTFRIGIREVIRGWDIGVASMKVGGKRRLTIPADLAYGRSGAPPSIPPNATLIFDVELVSC 362          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP1_RHIOR (FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  189 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            V +HY G+L + G VFD++   N  F  ++G G VI+ WD  +  + +G+ A L C P+YAYG  G PP +PP+ATL FEVEL+
Sbjct:   23 VTMHYTGTL-QNGSVFDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPPVIPPNATLNFEVELL 105          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP_ASHGO (FK506-binding protein 1 OS=Ashbya gossypii GN=FPR1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.200e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  132 KIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            KI R +  D  +  +   LV +HY G+L E  + FD++ +  + F   +G G VI+ WD+A+  + VGE A+LT    YAYG  G P  +PP+ATLIFEVEL+
Sbjct:   10 KIDRLSPGDGKTFPKTGDLVTIHYTGTL-ENEQKFDSSVDRGSPFQCNIGVGQVIKGWDVAIPKLSVGEKARLTIPGAYAYGPRGFPGLIPPNATLIFEVELL 111          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKB1A_MOUSE (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Mus musculus GN=Fkbp1a PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.200e-15
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  195 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            VHY G L E G+ FD++ + N  F F LGK  VIR W+  +  M VG+ AKL    +YAYG+ G P  +PP ATL+F+VEL+
Sbjct:   25 VHYTGML-EDGKKFDSSRDRNKPFKFTLGKQEVIRGWEEGVAQMSVGQRAKLIISSDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP2_CANGA (FK506-binding protein 2 OS=Candida glabrata GN=FPR2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.874e-15
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  186 LVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            +V VHY GSLAE G+VFD++   N    F+LG G VI  W+  +  M +GE   L   PE AYGS G+   +PP+A L F+VELV
Sbjct:   47 MVSVHYTGSLAENGKVFDSSLRRNEPIQFKLGAGQVIAGWEQGITGMCLGEKRTLHIPPELAYGSRGAGGVIPPNAVLDFDVELV 131          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP_CANGA (FK506-binding protein 1 OS=Candida glabrata GN=FPR1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  132 KIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELV 440
            KI R +  D  +  +   LV +HY G+L E G+ FD++ +  + F   +G G VI+ WD  +  + VGE A+LT    YAYG  G P  +PP+ATLIF+VEL+
Sbjct:   10 KIDRLSPGDGKTFPKQGDLVTIHYTGTL-ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDAGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNATLIFDVELL 111          
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Match: FKBP4_SPOFR (46 kDa FK506-binding nuclear protein OS=Spodoptera frugiperda GN=FKBP46 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  186 LVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVEL 437
            +V V+YEG L +  ++FD   +    F F LG   VI  WD+ +  MKVG   K+ C P  AYG+ GSPP +PP++TL+FEV+L
Sbjct:  326 VVMVYYEGRLKQNNKMFDNCVK-GPGFKFRLGSKEVISGWDVGIAGMKVGGKRKIVCPPAMAYGAKGSPPVIPPNSTLVFEVDL 408          
The following BLAST results are available for this feature:
BLAST of BQ623896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
FKBP6_HUMAN5.790e-1635.96FK506-binding protein 6 OS=Homo sapiens GN=FKBP6 P... [more]
FKBP2_EMENI9.876e-1650.00FK506-binding protein 2 OS=Emericella nidulans GN=... [more]
FKBP_KLULA1.290e-1540.78FK506-binding protein 1 OS=Kluyveromyces lactis GN... [more]
FKBP4_DICDI1.290e-1550.00FK506-binding protein 4 OS=Dictyostelium discoideu... [more]
FKBP1_RHIOR1.290e-1546.43FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP... [more]
FKBP_ASHGO2.200e-1542.72FK506-binding protein 1 OS=Ashbya gossypii GN=FPR1... [more]
FKB1A_MOUSE2.200e-1548.78Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Mus ... [more]
FKBP2_CANGA2.874e-1548.24FK506-binding protein 2 OS=Candida glabrata GN=FPR... [more]
FKBP_CANGA3.753e-1541.75FK506-binding protein 1 OS=Candida glabrata GN=FPR... [more]
FKBP4_SPOFR3.753e-1545.2446 kDa FK506-binding nuclear protein OS=Spodoptera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00976 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623896 ID=BQ623896; Name=BQ623896; organism=Citrus sinensis; type=EST; length=510bp
AGTCAATCGGTCAACTCGATCTCTCTTTTACGGTCGATAATTTTCATCTC
ATCACGATACGGTAGGGTTTTAAGCATTGAGAAGTTATGGGTGATTCAAT
TGATTTGACGGGTGATGAAGGTGTCATCAAGAAGATCGTAAGGCAAGCTA
AACCTGATGCTCTCTCTCCTACTGAGGACCTTCCTCTTGTTGATGTTCAT
TATGAAGGCAGTCTTGCTGAAACTGGTGAAGTTTTCGATACCACACATGA
AGACAATACTGTATTTTCTTTTGAGCTTGGGAAGGGTTCAGTGATTCGGG
CTTGGGATATTGCATTAAGAAGCATGAAGGTTGGGGAGGTTGCAAAACTC
ACTTGCAAGCCAGAATATGCCTATGGCAGTGCAGGATCTCCTCCAGATGT
CCCACCTGATGCGACACTTATTTTTGAGGTGGAGTTGGTGGCCTGCAGGC
CAAGGAAAGGTTCTAGTCTTGGTAGCGTATCGGAAGAGAGAGCCAGGCCT
AGAGGAGCTT
back to top