BQ623897

Overview
NameBQ623897
Unique NameBQ623897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.316e-61
Identity = 122/228 (53.51%), Postives = 150/228 (65.79%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT E + K+VS LN                 F+++  VKSSL     V+AQN W+ KGGAFTGEISAE LV++G  WVILGHSERR ++ E +EF+G K AYALSQ LKV+AC+GE LE+REAG T DV   Q KA AD ++ W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R W    + S +  S    +           ELA + D+DGF
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPP--FIYIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDW-LKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGF 272          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.000e-61
Identity = 124/228 (54.39%), Postives = 149/228 (65.35%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT + + K++S LN                 F+++  VKSSL     ++ QN WV KGGAFTGEIS E L +LG  WVILGHSERR ++ E +EF+G K AYALS+GL VIAC+GE LE+REAG T DV  AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R W   K+ S    S T  +         + ELA + D+DGF
Sbjct:   65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPP--FVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGW-LKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGF 289          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.455e-60
Identity = 123/228 (53.95%), Postives = 150/228 (65.79%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT + + K+VS LN  +              FL+L  VKSSL     ++ QN WV KGGAFTGEIS E L ++G  WVILGHSERR ++ E ++F+G K AYAL++GL VIAC+GE LE+REAG T DV   Q KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R+W   K+ S    S T  +         + ELA + D+DGF
Sbjct:   64 KFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPP--FLYLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREW-LKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGF 288          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56
Identity = 120/228 (52.63%), Postives = 144/228 (63.16%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KF VGGNWK NG    +  +  VL  G               +L L   +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  ES+E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW F ++ S +  +               RELAA+PD+DGF
Sbjct:    4 KFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLA--RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKW-FTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGF 228          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.193e-54
Identity = 117/232 (50.43%), Postives = 141/232 (60.78%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRI----RKWCKTARELAAQPDVDGF 686
            KFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ +LG  WV+LGHSERR I  ES+E +G KV +ALS+GL VIAC+GE L++REAG T  VV  QTKAIAD V  W  +VLAYEPVWAIGTGK ATP QAQEVH +LR W  C     N         RI         T +ELA+QPDVDGF
Sbjct:    6 KFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKC-----NVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.193e-54
Identity = 114/228 (50.00%), Postives = 143/228 (62.72%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWK NG  + + ++++ LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+ALS+GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR W    + S     +T  +        T +ELA+QPDVDGF
Sbjct:    5 KFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGW-LKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGF 229          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.558e-54
Identity = 113/228 (49.56%), Postives = 144/228 (63.16%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWK NG  + + ++++ LN G+               ++L   +  L   F V+AQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  ES+E +G KVA+ALS+ + VI C+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+W    + S +   +   +        T +EL AQPD+DGF
Sbjct:    5 KFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPT--IYLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREW-LKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGF 229          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.657e-54
Identity = 113/228 (49.56%), Postives = 143/228 (62.72%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWK NG  + + ++++ LN G+               ++L   +  L     ++AQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  E +E +G KVA+ALS+G+ VIAC+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+W    + S     +   +        T RELA QPD+DGF
Sbjct:    5 KFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPA--IYLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWV-KTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGF 229          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.657e-54
Identity = 113/228 (49.56%), Postives = 142/228 (62.28%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR W    + S     +T  +        T +ELA+QPDVDGF
Sbjct:    6 KFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGW-LKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.657e-54
Identity = 113/228 (49.56%), Postives = 142/228 (62.28%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR W    + S     +T  +        T +ELA+QPDVDGF
Sbjct:    6 KFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGW-LKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGF 230          
The following BLAST results are available for this feature:
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE1.316e-6153.51Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH5.000e-6154.39Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN1.455e-6053.95Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_CULTA4.843e-5652.63Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_RAT1.193e-5450.43Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_RABIT1.193e-5450.00Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_XENTR1.558e-5449.56Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_XENLA2.657e-5449.56Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_PONAB2.657e-5449.56Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR2.657e-5449.56Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00977 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623897 ID=BQ623897; Name=BQ623897; organism=Citrus sinensis; type=EST; length=687bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGGCTTTTTGCAAACACCAGTCCTGAAATTGCT
GCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAACTGCA
AGGGAATTGGCTGCACAGCCTGATGTTGACGGATTTT
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