BQ623897

Overview
NameBQ623897
Unique NameBQ623897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PARUW (Triosephosphate isomerase OS=Protochlamydia amoebophila (strain UWE25) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.519e-24
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  177 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            + AQN      GAFTGEI+ +M+   G  +V+LGHSERR +  E N F+  KV  AL  GL  + CVGET E+R++G T  ++  Q +     +++     +++AYEPVWAIG G+ A P  AQE+H   RK
Sbjct:   64 IGAQNMNDASEGAFTGEIAGKMVKEAGASFVLLGHSERRHLYKEDNAFINRKVKKALEIGLTPVLCVGETFEERKSGETQQIIRTQIQECLAGLTAEDLKTLIIAYEPVWAIGNGQNAKPEGAQEIHQFCRK 195          

HSP 2 Score: 20.7866 bits (42), Expect = 3.519e-24
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  586 SPEIAAATRIIYGGSVN 636
            S E+A    I YGGSVN
Sbjct:  202 SEELAEQIVIQYGGSVN 218          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_KINRD (Triosephosphate isomerase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.520e-24
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  177 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            + AQ+      GA+TGE+SA ML  LG+ +V +GHSERR    E++  V  K A AL+ GL  I CVGE LE R+A   ++    Q T+A+    +   + +VLAYEPVWAIGTG+VATP  AQEV   LR+
Sbjct:   68 LGAQDVSEHDSGAYTGEVSAAMLAKLGVTYVAVGHSERRQYHGETDATVRAKAAKALAAGLTPIVCVGEALEIRKAEQHVEFTVGQVTQALTGLTAEQAAGLVLAYEPVWAIGTGEVATPEDAQEVCAALRE 199          

HSP 2 Score: 22.7126 bits (47), Expect = 3.520e-24
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  598 AAATRIIYGGSVNGAKL 648
            A A R++YGGSV  A +
Sbjct:  210 ADAVRVLYGGSVKPASI 226          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_MYCVP (Triosephosphate isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.520e-24
Identity = 56/124 (45.16%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  183 AQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEV 548
            AQ+      GA+TGEIS   L  LG  + ++GHSERR   NE +  V  K A A   GL  I C+GE L+ REAG+ ++    Q +     +S+      V+AYEPVWAIGTG+VA+ A AQEV
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHNEDDALVAAKAAAAFKHGLTPIICIGEHLDVREAGNHVEYNVNQLRGSLAGLSAEQIGQAVIAYEPVWAIGTGRVASAADAQEV 191          

HSP 2 Score: 31.187 bits (69), Expect = 3.520e-24
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  586 SPEIAAATRIIYGGSVN 636
            SPE+AA  R++YGGSVN
Sbjct:  204 SPELAAGVRVLYGGSVN 220          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_DEHSC (Triosephosphate isomerase OS=Dehalococcoides sp. (strain CBDB1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.523e-24
Identity = 70/189 (37.04%), Postives = 100/189 (52.91%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            +  + GNWK N T  E   +V  + + +              F+ L  +K+ L      + AQN + ++ GA+TGEIS  ML  L   +VI+GHSERR    E+ + V  K+  AL  GL  I CVGE  E+ E G T  V+  Q K   D + + S I++AYEP+WAIGTGK AT ++A      +R+
Sbjct:    3 QIIIAGNWKMNTTLSEACTLVQSM-KCELERIEGIEKIICPPFISLYPIKTILENSSIKLGAQNLFYQEKGAYTGEISPLMLKEL-CQYVIIGHSERRAYFGETGQVVNQKIKAALQAGLLPIVCVGEKPEENENGQTRQVLETQLKEALDGL-NLSCIIIAYEPIWAIGTGKAATASEANSAIGYIRR 188          

HSP 2 Score: 20.4014 bits (41), Expect = 3.523e-24
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  598 AAATRIIYGGSVN 636
            A  + I+YGGSVN
Sbjct:  199 AQTSPILYGGSVN 211          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_DICT6 (Triosephosphate isomerase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.524e-24
Identity = 70/191 (36.65%), Postives = 101/191 (52.88%), Query Frame = 3
Query:   12 VGGNWK----CNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            +  NWK    C  T   +K+ +  L++G               ++   L+K +      + AQN + +K GA+TGEIS  ML +L   +VI+GHSERR   +E+NE +  K+  A + GL  I CVGE  E+RE G T +V+  Q +   + +   +   IV+AYEPVWAIGTG  A    A EV   +RK
Sbjct:    6 IAANWKMYKTCAETESFIKEFIE-LSKGYEEKEIVICPPFTSLYVASKLLKDTA---IKLGAQNMFWEKEGAYTGEISPIMLKDLNCTYVIIGHSERRNYFSETNEMINKKIKSAFNYGLIPIFCVGEKWEERERGKTEEVITKQVREGLEGLEKENVEKIVIAYEPVWAIGTGHSAKGEDANEVAGLIRK 192          

HSP 2 Score: 21.9422 bits (45), Expect = 3.524e-24
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  592 EIAAATRIIYGGSVN 636
            E++   RI YGGSVN
Sbjct:  201 EVSQKIRIQYGGSVN 215          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PROMS (Triosephosphate isomerase OS=Prochlorococcus marinus (strain AS9601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKK-------IVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFH---VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K  + GNWK + T  E K        ++  +NE +                F  +   S   DF    +++QN   +  GAFT EIS +ML+  G+ + I+GHSE R   +ES+E +  +  +A S GL  I CVGETLEQRE G  + V+  Q +   +     SN+++AYEP+WAIGTGK      A ++   +RK
Sbjct:    3 KSVIAGNWKMHMTCAEAKSYLKEFIPLIKDINEDRKVVIAPP---------FTAISTFSNHSDFDYLDISSQNIHWEDQGAFTAEISPKMLLEHGVSYAIVGHSEPRKYFSESDEQINKRAVFAQSSGLTPIVCVGETLEQRERGEAVRVITRQVEQGLENTDP-SNLIVAYEPIWAIGTGKTCQAEDANKICSLIRK 190          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 76/228 (33.33%), Postives = 112/228 (49.12%), Query Frame = 3
Query:   18 GNWKCNGTPEEVKKIVSVLNEG-QXXXXXXXXXXXXXXFLFLG----LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            GNWK NG     +  V  +  G +              F +L     L+K        + AQ+      GA+TGE+ A ML  +G  +VI+GHSERR +  E++E V  K   AL  G+  + CVGET ++R +G   ++V +Q  K ++      ++ ++AYEPVWAIGTGKVA+   AQ++H  +R          +  S+   L         A EL A PD+DG
Sbjct:    8 GNWKMNGNLASNQDWVKTVARGMESGMPAGRKFAVCPSFPYLSQCSTLIKEHSLAFLSLGAQDVSAHGAGAYTGEVGASMLKEMGCEYVIVGHSERRQMHQEADESVAAKALQALDSGMTPVICVGETADERNSGRAEEIVCSQVAKQVSVLQDRLADCLIAYEPVWAIGTGKVASAQVAQDMHRAIRMQ--LAEFDEDVASHVGILYGGSVKPDNAVELFAMPDIDG 233          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CHRVO (Triosephosphate isomerase OS=Chromobacterium violaceum GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 77/232 (33.19%), Postives = 116/232 (50.00%), Query Frame = 3
Query:   18 GNWKCNGTPEEVKKIVS-VLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKK---GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKW------CKTARELAAQPDVDG 683
            GNWK N   +  +++ + +L +GQ               ++L  +   L+    +A  +  V +    GAFTGE+SA ML ++G  + ++GHSERR    E N  +  K+  A++ G+  + CVGETL QREAG  ++VV  Q   ++D        V+AYEPVWAIGTGKVA+  Q  E+H  ++ W         C  N     +IR         + A  + A  +VDG
Sbjct:    8 GNWKMNTRGDSARQLAAALLADGQTNREGVGIAAPA---VYLAALAEQLKGG-KIALSSQDVSRFAADGAFTGEVSAAMLADVGCRYALVGHSERRQYFREDNAALLAKMRNAIAAGVTPVLCVGETLAQREAGDYLNVVREQLAILSDIAD--GEYVVAYEPVWAIGTGKVASLEQIAEIHAFIKNW---------CLQNAGGSAKIRVLYGGSVKAENAEAILATENVDG 224          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_MYCCT (Triosephosphate isomerase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI--VLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K  + GNWK NGT + ++  +  ++                  L  G+    L  +  +AAQN   +  GA+TGEIS  ML  +G+ +VI+GHSERR +  E++  +  K    L   +  I C GE+LE +E G T++ V  Q   I   +S    I  ++AYEP+WAIGTGK A    A+EV  ++R+
Sbjct:    3 KKVIFGNWKMNGTNKSLEDFLYQVDNKVNNSKITAGLAVPYVMLQTGI---KLAKNVKIAAQNVHFELKGAYTGEISVSMLKEIGVEYVIIGHSERREMFFETDLDINKKAKILLENNMIPIICCGESLETKEQGKTIEFVNNQINLIYQNISKQDAIKTIIAYEPIWAIGTGKTANSLDAEEVCKKIRE 189          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_GLUDA (Triosephosphate isomerase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.969e-24
Identity = 67/179 (37.43%), Postives = 96/179 (53.63%), Query Frame = 3
Query:   18 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEV 548
            GNWK NG     + +V  + EG               F  L  +   L+     + AQ+C     GA TG+ISA ML +LG+ +V+LGHSERR    E +E V +K   AL+ GL  I C+GET +Q+ +G + D +  Q + ++ D  S     V+AYEPVWAIG+G    PA +Q++
Sbjct:    7 GNWKMNGLGAPSRDLVGEIAEGLATIPSPPQVVVCPPFTQLAGIGPLLKGSGIALGAQDCHQAASGAHTGDISAAMLADLGVEYVVLGHSERRRDHGELDETVREKTQTALAAGLTPIVCIGETGDQKASGESRDAIGWQIQGSLPDGFSG----VVAYEPVWAIGSG---NPAASQDI 178          

HSP 2 Score: 23.8682 bits (50), Expect = 5.969e-24
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  610 RIIYGGSVNG 639
            RI+YGGSVNG
Sbjct:  201 RILYGGSVNG 210          
The following BLAST results are available for this feature:
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PARUW3.519e-2443.18Triosephosphate isomerase OS=Protochlamydia amoebo... [more]
TPIS_KINRD3.520e-2447.73Triosephosphate isomerase OS=Kineococcus radiotole... [more]
TPIS_MYCVP3.520e-2445.16Triosephosphate isomerase OS=Mycobacterium vanbaal... [more]
TPIS_DEHSC3.523e-2437.04Triosephosphate isomerase OS=Dehalococcoides sp. (... [more]
TPIS_DICT63.524e-2436.65Triosephosphate isomerase OS=Dictyoglomus thermoph... [more]
TPIS_PROMS3.743e-2434.85Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_POLSQ3.743e-2433.33Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_CHRVO3.743e-2433.19Triosephosphate isomerase OS=Chromobacterium viola... [more]
TPIS_MYCCT4.888e-2434.74Triosephosphate isomerase OS=Mycoplasma capricolum... [more]
TPIS_GLUDA5.969e-2437.43Triosephosphate isomerase OS=Gluconacetobacter dia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00977 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623897 ID=BQ623897; Name=BQ623897; organism=Citrus sinensis; type=EST; length=687bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGGCTTTTTGCAAACACCAGTCCTGAAATTGCT
GCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAACTGCA
AGGGAATTGGCTGCACAGCCTGATGTTGACGGATTTT
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