BQ623897

Overview
NameBQ623897
Unique NameBQ623897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 102/229 (44.54%), Postives = 136/229 (59.39%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFL--FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            FFVGGN+K NGT   +K+IV  LN  +              +L   + LVK S      V AQN ++K  GAFTGE S + + ++G  WVILGHSERR    E ++ + +K A+ALSQG+ VI C+GETL+Q++AG+T+ VV  Q +A+ D+V  WSN+V+AYEPVWAIGTG  ATP  AQE+H  +R++   K         T  L       K A     +PDVDGF
Sbjct:    5 FFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTVSLVKKS---QVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREF-LAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGF 229          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 2.483e-46
Identity = 90/194 (46.39%), Postives = 124/194 (63.92%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFL--FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCK 581
            FFVGGN+K NG+ + +K+IV  LN                 +L   + LVK   +P   V AQN ++K  GAFTGE S + + ++G  WVILGHSERR   +E ++F+ DK  +AL QG+ VI C+GETLE+++AG T+DVV  Q  A+ + V  W+N+V+AYEPVWAIGTG  ATP  AQ++H  +RK+   K
Sbjct:    5 FFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASK 195          

HSP 2 Score: 24.2534 bits (51), Expect = 2.483e-46
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  571 LFANTSPEIAAATRIIYGGSVNGA 642
            L +    + A+  RI+YGGS NG+
Sbjct:  192 LASKLGDKAASELRILYGGSANGS 215          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.483e-46
Identity = 92/189 (48.68%), Postives = 122/189 (64.55%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 569
            FFVGGN+K NG+ E +K IV  LN  +              F +L L K SL+ P   VA QN + K  GAFTGE+S   L ++G  WVILGHSERR I  ES+E++ DK  YAL  GL VI C+GET+++++AG T+DVV +Q   +  ++  WSN+V+AYEPVWAIGTG  AT   AQ++H E+R +
Sbjct:    5 FFVGGNFKMNGSLESIKAIVERLNASELDPKTEVVISPP--FPYLLLAKESLKKPTVSVAGQNSFDKGDGAFTGEVSVAQLKDVGAKWVILGHSERRTINKESSEWIADKTKYALDNGLDVILCIGETIDEKKAGKTLDVVRSQLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAY 191          

HSP 2 Score: 25.0238 bits (53), Expect = 2.483e-46
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  598 AAATRIIYGGSVNG 639
            A   RIIYGGSVNG
Sbjct:  200 ADKVRIIYGGSVNG 213          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.664e-46
Identity = 99/225 (44.00%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   21 NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLI--LNESNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            NWKCN +  ++ ++VS  N                  ++L   + +LR DF  +AQN W+ KGGAFTGE+ A M+ ++G  WVILGHSERR I  L ES+  +  K AYAL    L VI C+GE LE+RE+G T+ V   Q +A++D +S WS++V+AYEPVWAIGTGKVATP QA++VH  +R W    + S    ++T  L            LA QP++DGF
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAW-LANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGF 224          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 4.218e-46
Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGL-VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR 563
            +FFVGGN+K NGT +++  I+  LN+                 L+LGL V+ + +P   + AQN + K  GAFTGE  A  ++++G  W + GHSERR I+ ES+EF+ +K  +AL  G+KVI C+GETLE+R+ G T+DV A Q  A++  VS WSNIV+AYEPVWAIGTG  ATP  A+E H  +R
Sbjct:    4 QFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPA--LYLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIR 189          

HSP 2 Score: 27.335 bits (59), Expect = 4.218e-46
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  592 EIAAATRIIYGGSVNG 639
            E A  TRI+YGGSVNG
Sbjct:  199 EQAEKTRILYGGSVNG 214          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.543e-46
Identity = 105/221 (47.51%), Postives = 135/221 (61.09%), Query Frame = 3
Query:   33 NGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIR----KWCKTARELAAQPDVD 680
            NG  ++V  IV  L +G                ++L  V+S +     VAAQNCW    GAFTGEIS  M+ ++G  WVILGHSERR I  E ++ V +KVA+AL  GLKVIAC+GETLE+REAG T +VV  QTKA+   + ++W+N+VLAYEPVWAIGTGK A+P QAQ+VH  LR W      S N   +     RI+         A+EL+A PD+D
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPA--IYLAYVQSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWL-----SSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.255e-45
Identity = 109/240 (45.42%), Postives = 139/240 (57.92%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVS-VLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFH-----VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCK----TARELAAQPDVDGF 686
            KF VGGNWKCNGT   ++ +   V                   F+++  V+  L  + +     V+A+N W K G A+TGE+   MLV+  +P+VILGHSERR I +ESNE V +KV  A+  GLKVIAC+GET  QR A  T +VVAAQ KAI + +S  +W NI+LAYEPVWAIGTGK ATP QAQEVH  +RKW      + N         RI+           ELA + D+DGF
Sbjct:    5 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKW-----MTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGF 238          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.945e-45
Identity = 105/230 (45.65%), Postives = 131/230 (56.96%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGN+K NG  E    I+  LN                  L+L   +     +  VAAQN + K  GAFTGEIS + L    I W ILGHSERR+IL E++EF+  K   A+  GL+VI C+GETLE+REA  T+DVV  Q  A A  +S   W+ +V+AYEPVWAIGTGKVAT  QAQEVH  +RKW      S     NT  +       K  ++LA + D+DGF
Sbjct:    4 KFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPA--LYLLQAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKW-LKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.568e-45
Identity = 105/231 (45.45%), Postives = 135/231 (58.44%), Query Frame = 3
Query:   21 NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIR------KWCKTARELAAQPDVDGF 686
            NWKCNG+   +  ++  LN                 FL + + K+ L  P F +AAQN  + + GAFTGE+S ++L + GI WV+LGHSERRL   E+NE V +KVA A + G  VI CVGET E+REAG T  VV  Q  A+A ++S  +WS +V+AYEPVWAIGTGKVATP QAQEVH  LR+W   K         TD   ++R         K AR L    D++GF
Sbjct:   12 NWKCNGSESLLVPLIETLNAATFDHDVQCVVAPT--FLHIPMTKARLTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSK-------LGTDIAAQLRILYGGSVTAKNARTLYQMRDINGF 232          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.805e-44
Identity = 83/186 (44.62%), Postives = 116/186 (62.37%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR 563
            FFVGGN+K NG+ + +K+IV  LN                 +L   +   S  P   V AQN + K  GA+TGE S + + ++G  WVILGHSERR   NE +E V +K A+AL +G+ VI C+GETL++++AG T+DVV  Q   + ++V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R
Sbjct:    5 FFVGGNFKLNGSKQSIKEIVERLNTADLADNVEVVICPPATYLDHAVSLVS-HPQVTVGAQNAYTKASGAYTGENSVDQIKDVGAKWVILGHSERRTYFNEDDEQVAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIR 189          

HSP 2 Score: 29.6462 bits (65), Expect = 3.805e-44
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  571 LFANTSPEIAAATRIIYGGSVNGA 642
            L   TS ++A A RI++GGS NGA
Sbjct:  192 LAERTSRDVADAVRILFGGSANGA 215          
The following BLAST results are available for this feature:
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ZYGBA1.196e-4644.54Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_YEAST2.483e-4646.39Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_YARLI2.483e-4648.68Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_GRAVE2.664e-4644.00Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_CANAL4.218e-4647.34Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_HELVI4.543e-4647.51Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_ENTHI2.255e-4545.42Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_EMENI2.945e-4545.65Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_TRYCR8.568e-4545.45Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_ASHGO3.805e-4444.62Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00977 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623897 ID=BQ623897; Name=BQ623897; organism=Citrus sinensis; type=EST; length=687bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGGCTTTTTGCAAACACCAGTCCTGAAATTGCT
GCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAACTGCA
AGGGAATTGGCTGCACAGCCTGATGTTGACGGATTTT
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