BQ623897

Overview
NameBQ623897
Unique NameBQ623897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 96/227 (42.29%), Postives = 132/227 (58.15%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            FF+GGN+K NGT   +K+IV  LN                 +L    V  + +    VAAQN ++K  GAFTGE S E + ++G  WVILGHSERR   +E++EF+ DK  +AL  G+KVI C+GETLE+++ G T++VV  Q +A+ D+V  W+N+V+AYEPVWAIGTG  AT   AQ +H  +R++   K  S +       L       K A     + DVDGF
Sbjct:    5 FFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHA-VSLNKKAQVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREF-LAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGF 229          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 99/225 (44.00%), Postives = 133/225 (59.11%), Query Frame = 3
Query:   21 NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            NWKCNG+ + + +++ + N                 F+ L + K  L  P F +AAQN  + K GAFTGE+S  +L + G+ W++LGHSERR    E+NE V DKVA A++ G  VIAC+GETL++RE+G T  VV  Q  AIA ++  + W+ +V+AYEPVWAIGTGKVATP QAQE H  +R W   K  + +       L       K AR L  Q DV+GF
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVAST--FVHLAMTKERLSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGA-DVAGELRILYGGSVNGKNARTLYQQRDVNGF 231          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.126e-43
Identity = 80/188 (42.55%), Postives = 118/188 (62.77%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 569
            FF+GGN+K NG+   +K+IV  LN                 +L   +  +  R +  ++AQN + K  GA+TGE S E + ++G  WVILGHSERR   NE++E V +K  +AL  G+KVI C+GETLE+++   T+ VV  Q +A+ ++V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R++
Sbjct:    5 FFIGGNFKMNGSKASIKEIVDRLNGASIPSNVEVVIAPPAIYLDHAVALNK-RKEVKISAQNAYSKASGAYTGENSVEQIKDVGAEWVILGHSERRTYFNETDEIVAEKTKFALDSGVKVILCIGETLEEKQQNITLQVVQRQLQAVLEKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREF 191          

HSP 2 Score: 26.1794 bits (56), Expect = 9.126e-43
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  586 SPEIAAATRIIYGGSVNG 639
            S ++A + RI+YGGS NG
Sbjct:  197 SRDVADSVRILYGGSANG 214          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.368e-42
Identity = 102/230 (44.35%), Postives = 134/230 (58.26%), Query Frame = 3
Query:    6 FFVGGNWKCNGTP-EEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            FFVGGNWK N T     K +V  LN+                 L+L  ++        VAAQN + K+ GAFTGEIS + + + GIP+VILGHSERR + +E++E V  K   AL  GLKVI C+GETL++RE G T  V   Q  A+  ++    WSNIV+AYEPVWAIGTGKVAT +QAQE H ++RK+      S    S T  +         +++LA+Q D+DGF
Sbjct:    5 FFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPA--LYLLPIQEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKY-LATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGF 231          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.585e-42
Identity = 83/188 (44.15%), Postives = 113/188 (60.11%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 569
            FFVGGN+K NGT + +K+IV  LN                 +L   +   S +    V  QN + K  GA+TGE S + L ++G  WVILGHSERR   +E ++ V +K  +AL QGL VI C+GETLE+++AG T+ VV  Q  A+   V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R +
Sbjct:    5 FFVGGNFKLNGTKKSIKEIVDRLNTASLPENVEVVICPPATYLDYTVSLVS-KKQVTVGGQNTYTKASGAYTGENSVDQLKDVGAKWVILGHSERRTYFHEDDKIVAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSY 191          

HSP 2 Score: 26.9498 bits (58), Expect = 7.585e-42
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  592 EIAAATRIIYGGSVNGA 642
            + A  TRI+YGGS NGA
Sbjct:  199 DTAEKTRILYGGSANGA 215          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.725e-40
Identity = 95/229 (41.48%), Postives = 130/229 (56.77%), Query Frame = 3
Query:    6 FFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            FFVGGN K NG+   ++ +   +NE                + +L  + + L    F V +QNC+    GAFTGEISA MLV+LGIP+VI+GHSERR + +ES+E +  K  YA+S GL VI C+GE L  R++ +T  +++ Q K  A      WS IV+AYEPVWAIGTG VATP +AQ+ H  +RKW   +  S +    T  +            L+ Q D+DGF
Sbjct:    7 FFVGGNHKMNGSKSMLESLSKGMNES-VENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKW-ISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGF 233          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.416e-39
Identity = 92/233 (39.48%), Postives = 134/233 (57.51%), Query Frame = 3
Query:    9 FVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWC---KTARELAAQPDVDGF 686
            F+GGN+KCNG+ + +K  V+ +   +               L   +  ++ +    +AAQN +++  GA+TGE S EML+++G+  VI+GHSERR I+ E+NE    K   AL +G+ VI C GETL++R+A +TM+V  AQ +A+   +      W N+V+AYEPVW+IGTG VATP QA+EVH  LRKW   K     C     H+R I           +L   P++DGF
Sbjct:    7 FIGGNFKCNGSLDFIKSHVASIASYKIPESVDVVVAPSFVHLSTAIAANTSKC-LKIAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEK----VCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGF 234          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 100/229 (43.67%), Postives = 125/229 (54.59%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            K  V GNWK N T +E   +   LNE                F+ L  V   +      V A+NC  K+ GA+TGE+SA M+ + G  +VILGHSERR    E+ E + DKV  AL+ GL  I C+GE LE+REA    +VVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  A  +        NT  L         A+EL A PDVDG
Sbjct:    3 KNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRS-AVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDG 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 100/229 (43.67%), Postives = 125/229 (54.59%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            K  V GNWK N T +E   +   LNE                F+ L  V   +      V A+NC  K+ GA+TGE+SA M+ + G  +VILGHSERR    E+ E + DKV  AL+ GL  I C+GE LE+REA    +VVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  A  +        NT  L         A+EL A PDVDG
Sbjct:    3 KNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRS-AVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDG 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.198e-38
Identity = 91/233 (39.06%), Postives = 132/233 (56.65%), Query Frame = 3
Query:    9 FVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWC---KTARELAAQPDVDGF 686
            F+GGN+KCNG+ + +K  V+ +   +               L   +  ++ +    +AAQN +++  GA+TGE S EML ++G+  VI+GHSERR I+ E++E    K   AL +G+ VI CVGETL++R+A  TM+V  AQ +A+   +      W  +V+AYEPVW+IGTG VATP QA+EVH  LRKW   K     C     H+R I           +L   P++DGF
Sbjct:    7 FIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSK-QLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEK----VCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGF 234          
The following BLAST results are available for this feature:
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_KLUMA9.473e-4442.29Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_TRYBB1.616e-4344.00Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_KLULA9.126e-4342.55Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_COPC71.368e-4244.35Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_CANGA7.585e-4244.15Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_DICDI3.725e-4041.48Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPI2_GIALA1.416e-3939.48Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_BACFR5.379e-3943.67Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN5.379e-3943.67Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPI1_GIALA1.198e-3839.06Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00977 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623897 ID=BQ623897; Name=BQ623897; organism=Citrus sinensis; type=EST; length=687bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGGCTTTTTGCAAACACCAGTCCTGAAATTGCT
GCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAACTGCA
AGGGAATTGGCTGCACAGCCTGATGTTGACGGATTTT
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