BQ623897

Overview
NameBQ623897
Unique NameBQ623897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.948e-38
Identity = 95/228 (41.67%), Postives = 122/228 (53.51%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVG NWK NG  + + +++   N                 +    L +  L P   VA QNC+    GAFTGEIS  M+ +LG+ WV+                   KVA+AL++ L VIAC+GE L++REAG T  VV  QTK IAD V  WS ++LAY+PVWA GTGK ATP QAQEVH +LR W    + S     +T  +        T +ELA+QPDV  F
Sbjct:    6 KFFVGRNWKMNGRKKCLGELIGTQNAATVPADTKVICALATAYN--ELARQKLAPKIAVAPQNCYKVTNGAFTGEISPGMVKDLGVTWVV-------------------KVAHALAERLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVILAYDPVWATGTGKTATPQQAQEVHKKLRGW-LKSNISDAVAQSTGIIYGGSVTKATCKELASQPDVAAF 211          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.994e-37
Identity = 78/188 (41.49%), Postives = 110/188 (58.51%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K+FV  NWKCNGT E +K + +  N                   +    +  L+  F    QN      G++TGE+SAE+  +L I +VI+GH ERR   +E++E V +K+  +L   LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK
Sbjct:    4 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRK 190          

HSP 2 Score: 21.557 bits (44), Expect = 2.994e-37
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  610 RIIYGGSVN 636
            RI+YGGSVN
Sbjct:  205 RILYGGSVN 213          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.994e-37
Identity = 78/188 (41.49%), Postives = 110/188 (58.51%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K+FV  NWKCNGT E +K + +  N                   +    +  L+  F    QN      G++TGE+SAE+  +L I +VI+GH ERR   +E++E V +K+  +L   LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK
Sbjct:    4 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRK 190          

HSP 2 Score: 21.557 bits (44), Expect = 2.994e-37
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  610 RIIYGGSVN 636
            RI+YGGSVN
Sbjct:  205 RILYGGSVN 213          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.122e-36
Identity = 100/231 (43.29%), Postives = 128/231 (55.41%), Query Frame = 3
Query:   12 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLR-----RIRKWCKTARELAAQPDVDG 683
            V GNWK N T  E  ++ + + E                F  L  V  ++      +AAQNC  +  GAFTGE+S  ML   G  +VILGHSERR +  E+NE V  KV  AL++GL+VI CVGETL++REAG T  +V AQ  + +AD VS  S +V+AYEPVWAIGTGK AT  QAQ+VH  +R      +      S   HLR      ++     A EL A PD+DG
Sbjct:    6 VVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGD----SAARHLRIQYGGSVKP--SNAAELFAMPDIDG 229          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.122e-36
Identity = 95/229 (41.48%), Postives = 123/229 (53.71%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            K  V GNWK N T +E   +   LNE                F+ L  V   +      V A+NC  K  GA+TGE+SAEM+ + G  +VILGHSERR    E+   + +KV  AL+ GL  I C+GE LE+REA    +VVAAQ +++       +S I+LAYEPVWAIGTGK A+P QAQE+H  +R     K+       NT  L         A+EL + PDVDG
Sbjct:    3 KNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGK-EIADNTSILYGGSCKPSNAKELFSNPDVDG 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36
Identity = 96/229 (41.92%), Postives = 123/229 (53.71%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            K  V GNWK N   +E   +   LNE                F+ L  V   + +    V A+NC  K  GA+TGE+SAEM+ + G  +VILGHSERR   +E+ E + +KV  AL+  LK I C+GE LE+REA    +VVAAQ  ++       +S I+LAYEPVWAIGTGK AT  QAQE+H  +R     K+       NT  L         A+EL A PDVDG
Sbjct:    3 KNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGK-EVADNTSILYGGSCKPSNAKELFANPDVDG 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.234e-36
Identity = 84/188 (44.68%), Postives = 115/188 (61.17%), Query Frame = 3
Query:   12 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRP-DFHVAAQNCWVKKG-GAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR 563
            V GNWK NGT   V +++      +              F+ +  V   +      V AQ+C ++ G GA TGE+SA+ LV+LG  WV++GHSERRL+L E++E V  K A A + GLK + C+GETLE+REAG T++VVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R
Sbjct:    6 VAGNWKMNGTRASVAELIESFR--RQALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIR 191          

HSP 2 Score: 22.7126 bits (47), Expect = 3.234e-36
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  577 ANTSPEIAAATRIIYGGSV---NGAKL 648
            A +   IA   R++YGGSV   N A+L
Sbjct:  195 ARSDRRIAEGVRLLYGGSVKADNAAEL 221          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.240e-35
Identity = 96/229 (41.92%), Postives = 118/229 (51.53%), Query Frame = 3
Query:   12 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            + GNWK NGT +    + + + +G               F  L  V+  +      + AQN  V   GAFTGEIS EML ++G  +VILGHSERR +  E+NE V  KVA A   GL  I CVGETLEQREA  TM V+  Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE H  +R     K    N       L         A+EL  Q DVDG
Sbjct:    6 IAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIR-GLLAKELGANVADAVRILYGGSMKPDNAKELLGQADVDG 233          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.059e-35
Identity = 76/188 (40.43%), Postives = 115/188 (61.17%), Query Frame = 3
Query:   12 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 569
            V GNWK NG     K +++ + +                F +L   +S++     + +QN   ++ GAFTGE+SA ML  +G  +VI+GHSERR +  E++  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++
Sbjct:    7 VAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQF 190          

HSP 2 Score: 25.7942 bits (55), Expect = 2.059e-35
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  577 ANTSPEIAAATRIIYGGSV 633
            A   P+IA + R++YGGSV
Sbjct:  192 AKDDPDIAQSLRLLYGGSV 210          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBL (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.681e-35
Identity = 82/191 (42.93%), Postives = 110/191 (57.59%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFL-GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K  + GNWK N + +E   +   + E                 L L G+ K     +  V AQN +     AFTGE S E L  LG+  V++GHSERR  L E+N F  +K+ + L     V+ CVGETL +RE+G T +V+++Q +     +   S+SN++LAYEPVWAIGTGKVATPAQAQEVHF +RK
Sbjct:    3 KTVIAGNWKMNLSEKEALSLAHSIKEKIPAISKGRISMIFPSTLHLAGVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRK 193          

HSP 2 Score: 23.8682 bits (50), Expect = 2.681e-35
Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = 1
Query:  568 GLFANTSPEIAAATRIIYGGSVNGAKLQ 651
            GLF     EIA +  I+YGGSV    +Q
Sbjct:  197 GLFLGAK-EIAESISILYGGSVKPDNIQ 223          
The following BLAST results are available for this feature:
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPISL_HUMAN5.948e-3841.67Putative triosephosphate isomerase-like protein LO... [more]
TPIS_PLAFA2.994e-3741.49Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF72.994e-3741.49Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_CHLP81.122e-3643.29Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_BACTN1.122e-3641.48Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_BACV81.465e-3641.92Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_PSEU53.234e-3644.68Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_MAGSM1.240e-3541.92Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_ALCBS2.059e-3540.43Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_LEPBL2.681e-3542.93Triosephosphate isomerase OS=Leptospira borgpeters... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00977 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623897 ID=BQ623897; Name=BQ623897; organism=Citrus sinensis; type=EST; length=687bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGGCTTTTTGCAAACACCAGTCCTGAAATTGCT
GCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAACTGCA
AGGGAATTGGCTGCACAGCCTGATGTTGACGGATTTT
back to top