BQ623897

Overview
NameBQ623897
Unique NameBQ623897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:78..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 1.815e-33
Identity = 86/192 (44.79%), Postives = 110/192 (57.29%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRP-DFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA---IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K  + GNWK + T  E KK VS+L   +              F  L  V   L   +  + AQN + +  GAFTGEIS  ML  +G+ +VI+GHSERR I  E +EF+  KV   L +G+  I CVGETLE+RE G T  VV  Q +      D+  +   +V+AYEPVWAIGTG+VATP QAQEVH  +RK
Sbjct:  403 KLILAGNWKMHKTISEAKKFVSLL-VNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEA-KRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRK 592          

HSP 2 Score: 21.9422 bits (45), Expect = 1.815e-33
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  592 EIAAATRIIYGGSV 633
            E A + RI+YGGS+
Sbjct:  601 ETAGSIRILYGGSI 614          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.980e-33
Identity = 88/228 (38.60%), Postives = 121/228 (53.07%), Query Frame = 3
Query:   12 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVK-KGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            V GNWK +GT   V ++   L  G                LF+  V   L+     V AQN  V+ + GA TGE++   L  +G  +V++GHSERR ++ ES E +  K A A   GL  + C+GETLE+REAG T++VV  Q  ++ D   +++++N V+AYEPVWAIGTG  A+P QAQ+VH  +RK    K        N   L         A EL   PD+DG
Sbjct:    6 VAGNWKMHGTRASVAELTQGL--GNMLIPEGIEVAVFPPALFINEVIDGLKGKGITVGAQNSAVQPEQGALTGEVAPSQLAEVGCKFVLIGHSERRQVIGESEEVLNRKFAAAQKSGLTPVLCIGETLEEREAGKTLEVVGRQLSSVIDAFGIAAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLAAKDA--EVAQNVQLLYGGSVKAANAAELFGMPDIDG 229          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 84/188 (44.68%), Postives = 106/188 (56.38%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLV-KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR 563
            K  V GNWK N      +++ + L                  FL L    K        + AQNC  +  GA+TGE+SA ML   G   VI+GHSERR    E+N  V  +V  AL++GL VI CVGETL +RE+G T D+V+AQ +     VS  SN+V+AYEPVWAIGTGK AT AQA+EVH  +R
Sbjct:    3 KKIVVGNWKMNNGVAASEQLAADLLAALGSSFTGCDVGIAPTFLSLTTAGKVIAGSTIQLVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIR 190          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIN (Triosephosphate isomerase OS=Leptospira interrogans GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.761e-33
Identity = 81/191 (42.41%), Postives = 109/191 (57.07%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K  + GNWK N + +E   +   + E                 L L  V   L      V AQNC+     AFTGE S + L  +G+  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RE+G T++V+++Q +     + S  +SN++LAYEPVWAIGTGKVATP+QAQEVH  +RK
Sbjct:    3 KTIIAGNWKMNLSLKEAVFLAHSIREKIPSISKDKVSMVFPSTLHLENVSKILEGSSVIVGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRK 193          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIC (Triosephosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.761e-33
Identity = 81/191 (42.41%), Postives = 109/191 (57.07%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K  + GNWK N + +E   +   + E                 L L  V   L      V AQNC+     AFTGE S + L  +G+  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RE+G T++V+++Q +     + S  +SN++LAYEPVWAIGTGKVATP+QAQEVH  +RK
Sbjct:    3 KTIIAGNWKMNLSLKEAVFLAHSIREKIPSISKDKVSMVFPSTLHLENVSKILEGSSVIVGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRK 193          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.761e-33
Identity = 93/228 (40.79%), Postives = 118/228 (51.75%), Query Frame = 3
Query:   12 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDG 683
            V GNWK NG+      +++ +                  +L   L   SL  D  +A  AQ+      GA+TGE+S  ML+     +VI+GHSERR    E+NE V  K   ALS GL  I CVGETLEQREAG T +VV  Q  A+   +  +  + IV+AYEPVWAIGTGK ATP  AQEVH  LR+    K+      +    L         A+EL A PD+DG
Sbjct:    6 VAGNWKMNGSLAANALLLAEIKAEFGNPACDVAVCVPAPYLAQCL---SLLSDSTIALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAKNA--QAATEVRILYGGSMKPDNAKELLAMPDIDG 228          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.761e-33
Identity = 94/228 (41.23%), Postives = 116/228 (50.88%), Query Frame = 3
Query:   18 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLR-----RIRKWCKTARELAAQPDVDG 683
            GNWK N T  E   + + + E                F  L  V   +      + AQNC  +  G FTGE+S  ML   G  +VILGHSERR +  E+N  V  KV  AL++GL VI CVGETL++RE G T  +V AQ       V+  S +V+AYEPVWAIGTGK AT  QAQEVH  +R     K          DHLR      ++     A EL A PD+DG
Sbjct:    3 GNWKMNNTIAESVDLATAIAEKVGADGVQCEVGIAPTFPALYEVCKVIEWSGIRLCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGETLDERERGVTGQIVTAQVVEGLIDVTDISKLVIAYEPVWAIGTGKTATKEQAQEVHALIR----AKVTELYGQKAADHLRIQYGGSVKP--SNAAELFAMPDIDG 224          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.170e-32
Identity = 77/192 (40.10%), Postives = 109/192 (56.77%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLF---LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR 563
            +  + GNWK N + E    +V  +  G               ++    + +V S L    ++ AQN  V K GAFTGEISA+M+ + G  +VI+GHSERR +  E++E V  KV  AL   L  + C+GE LE RE+ +T  VV+ Q + + DRV   ++ NI++AYEPVWAIGT   ATP QAQ+ H  +R
Sbjct:    3 QIIIAGNWKMNASKEATNTLVIGILSGMADVKSKVIVCVPSLYMSQVEVLVVDSQL----NLGAQNLNVNKLGAFTGEISADMIKDFGAKYVIVGHSERRSLYGETDEIVAQKVQVALDNNLTPLFCIGELLEDRESNNTKSVVSKQIQVVIDRVGIEAFKNIIVAYEPVWAIGTNVTATPQQAQDTHAFIR 190          

HSP 2 Score: 24.2534 bits (51), Expect = 1.170e-32
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  571 LFANTSPEIAAATRIIYGGSVN 636
            + A    +IA  T I+YGGS+N
Sbjct:  192 MLAEYDADIAQITSILYGGSMN 213          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_BACWK (Triosephosphate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.523e-32
Identity = 84/191 (43.98%), Postives = 106/191 (55.50%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPAQAQEVHFELRK 566
            K  + GNWK N T  E    V  + +GQ               LFL  LV  +   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A        + V+AYEP+WAIGTGK ++ A A EV   +RK
Sbjct:    3 KPIIAGNWKMNKTLAEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAKAEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKVTVIAYEPIWAIGTGKSSSSADANEVCAHIRK 192          

HSP 2 Score: 25.7942 bits (55), Expect = 1.523e-32
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  586 SPEIAAATRIIYGGSV 633
            SPE A A RI YGGSV
Sbjct:  199 SPEAAEAVRIQYGGSV 214          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_CYTH3 (Triosephosphate isomerase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVS-VLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKH 584
            K  + GNWK N T EE   + S V N  +              ++ L  V   +     + AQN + K+ GAFTGEISA ML ++G+ +VI+GHSERR    E+N+ + DKV  +L+ GL  + C GETL QREAG  ++ V AQ       +S   +  +V+AYEP+WAIGTG  A+  QAQE+H ++R+    K+
Sbjct:    3 KKVIAGNWKMNKTLEEGLSLASEVANMAKDEVPADVNLVMCIPYISLAAVSKVINDKVAIGAQNVYQKESGAFTGEISAPMLKSVGVKYVIIGHSERREYFGETNQQLADKVTISLANGLTPLFCCGETLAQREAGIHINFVNAQLTESLFHLSPEDFKKVVIAYEPIWAIGTGVTASDEQAQEMHAKIREHLASKY 199          
The following BLAST results are available for this feature:
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKT_THEMA1.815e-3344.79Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_PSEPW1.980e-3338.60Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_CHLCH2.586e-3344.68Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_LEPIN5.761e-3342.41Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_LEPIC5.761e-3342.41Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_HERAR5.761e-3340.79Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_CHLTE5.761e-3341.23Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_RUTMC1.170e-3240.10Triosephosphate isomerase OS=Ruthia magnifica subs... [more]
TPIS_BACWK1.523e-3243.98Triosephosphate isomerase OS=Bacillus weihenstepha... [more]
TPIS_CYTH31.676e-3240.10Triosephosphate isomerase OS=Cytophaga hutchinsoni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00977 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623897 ID=BQ623897; Name=BQ623897; organism=Citrus sinensis; type=EST; length=687bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGGCTTTTTGCAAACACCAGTCCTGAAATTGCT
GCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAACTGCA
AGGGAATTGGCTGCACAGCCTGATGTTGACGGATTTT
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