BQ623898
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16 Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 2 Query: 2 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 133 CQVVLMGAVEGYR+ GGPLGE D LYPGG+FDPLGLA+DPEAF Sbjct: 162 CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16 Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 2 Query: 77 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 268 LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++ Sbjct: 216 LYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15 Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 2 Query: 77 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 268 LYPGG F DPLGLA DP A+L++ EIK+ RLAM GF VQA TGKGPL N A HL+DP++ Sbjct: 213 LYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.640e-13 Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 2 Query: 53 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 271 P GEV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HL+DP +N Sbjct: 179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12 Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2 Query: 53 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 271 P GEV YPGG F+PL A EA K KEI NGRLAM + GF +Q VTGKGP +NL H++DP +N Sbjct: 178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12 Identity = 47/102 (46.08%), Postives = 57/102 (55.88%), Query Frame = 2 Query: 5 QVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262 ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 157 ELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12 Identity = 47/102 (46.08%), Postives = 57/102 (55.88%), Query Frame = 2 Query: 5 QVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262 ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 157 ELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11 Identity = 45/93 (48.39%), Postives = 56/93 (60.22%), Query Frame = 2 Query: 5 QVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 271 +V+L+G E YR T+P YPGG FDPL LA +D E LK EIK+ RLAM S FG+ VQA+ TG+G L +LA AD +NN Sbjct: 191 EVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11 Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 5 QVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244 +V+++G +E R DP +YPGG FDPLGLA DPE LK+ EIK+ RLAM + F +QA TGKGP+ LA Sbjct: 196 EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272 The following BLAST results are available for this feature:
BLAST of BQ623898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623898 ID=BQ623898; Name=BQ623898; organism=Citrus sinensis; type=EST; length=423bpback to top |