BQ623900

Overview
NameBQ623900
Unique NameBQ623900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8932 contig Csv1_Contig8932:104..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: HINT1_PONAB (Histidine triad nucleotide-binding protein 1 OS=Pongo abelii GN=HINT1 PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.670e-32
Identity = 68/129 (52.71%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   19 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 405
            MA E   A  A P    TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+ +  +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+H+LGGRQM+WPPG
Sbjct:    1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDNESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: HINT1_HUMAN (Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.848e-32
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   19 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 405
            MA E   A  A P    TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+    +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+H+LGGRQM+WPPG
Sbjct:    1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: HINT2_MOUSE (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Mus musculus GN=Hint2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.720e-32
Identity = 61/124 (49.19%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   34 EAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 405
            +A  AA    SPTIF +I+++ +P+ ++YED + L FRD+ PQAP H L+IP+    +  +S+AEE   ++LG LL  AK +A+ +GL+DG+R+V+NDG  G QSV+H+H+H+LGGRQ+ WPPG
Sbjct:   42 KAQKAAPGGASPTIFSRILDRSLPADILYEDQQCLVFRDVAPQAPVHFLVIPRKP--IPRISQAEEDDQQLLGHLLLVAKKIAQAQGLKDGYRLVVNDGKMGAQSVYHLHIHVLGGRQLQWPPG 163          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: YHIT_SYNY3 (Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803) GN=slr1234 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.120e-28
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   70 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 405
            TIF KII +EIP+ +VYEDD  LAF+D++PQAP H+L+IPK    L  LS A      +LG LL  AK VA   G+ D FR+VIN+G   GQ+VFH+H+H+LGGR  +WPPG
Sbjct:    5 TIFSKIIRREIPAAIVYEDDLCLAFKDVNPQAPVHVLLIPKKP--LPQLSAATPEDHALLGHLLLKAKEVAADLGIGDQFRLVINNGAEVGQTVFHLHLHILGGRPFSWPPG 114          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: YHIT_AQUAE (Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus GN=aq_141 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   73 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQ------EGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 405
            IF KI+  E+P+K VYEDDKVLAF DI+P AP HILIIPK    + G+   E     ++G + Y A+ +A+       E L  G+R+V N G + GQSVFH+H+HL+GGR+M+WPPG
Sbjct:    7 IFCKIVRGEVPAKKVYEDDKVLAFHDINPVAPVHILIIPKKH--IMGIQTLEPEDECLVGHMFYVARKIAEDLGIAPDENLNKGYRLVFNVGKDAGQSVFHLHLHLIGGREMSWPPG 121          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: HINT_SHIFL (HIT-like protein hinT OS=Shigella flexneri GN=hinT PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   70 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 390
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLLGGR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: HINT_ECOLI (HIT-like protein hinT OS=Escherichia coli (strain K12) GN=hinT PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   70 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 390
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLLGGR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: HINT_ECO57 (HIT-like protein hinT OS=Escherichia coli O157:H7 GN=hinT PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   70 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 390
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLLGGR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: Y961_HAEIN (HIT-like protein HI0961 OS=Haemophilus influenzae GN=HI0961 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.417e-23
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 1
Query:   70 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIP-KVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 390
            TIF KII KEIP+ +VY+D+ V AFRDI PQA THILIIP KV   +  +++ +E     LGRL   A  +AK+EG+ EDG+R+++N   +GGQ VFH+H+HL+GG  +
Sbjct:    5 TIFSKIIRKEIPANIVYQDELVTAFRDISPQAKTHILIIPNKVIPTVNDVTEQDE---VALGRLFSVAAKLAKEEGVAEDGYRLIVNCNKHGGQEVFHLHMHLVGGEPL 110          
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Match: PKIA_DICDI (Protein pkiA OS=Dictyostelium discoideum GN=pkiA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 58/129 (44.96%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   25 SENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAE-ERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 405
            SE+   +   P D  TIF KII+  IPSK  Y+D+  +A  DI+PQAP H+L+IPK+   GL+ ++  + E++ E +G ++     +A  +G  D +R+VIN+G  G QSV  +H+H+LGGRQMNWPPG
Sbjct:    2 SESVGNIRIDPRD--TIFAKIISGAIPSKKFYDDEYCIAIEDINPQAPVHLLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHIASLKGA-DSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG 127          
The following BLAST results are available for this feature:
BLAST of BQ623900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HINT1_PONAB1.670e-3252.71Histidine triad nucleotide-binding protein 1 OS=Po... [more]
HINT1_HUMAN2.848e-3252.71Histidine triad nucleotide-binding protein 1 OS=Ho... [more]
HINT2_MOUSE3.720e-3249.19Histidine triad nucleotide-binding protein 2, mito... [more]
YHIT_SYNY31.120e-2855.36Uncharacterized HIT-like protein slr1234 OS=Synech... [more]
YHIT_AQUAE8.027e-2750.43Uncharacterized HIT-like protein aq_141 OS=Aquifex... [more]
HINT_SHIFL8.027e-2753.70HIT-like protein hinT OS=Shigella flexneri GN=hinT... [more]
HINT_ECOLI8.027e-2753.70HIT-like protein hinT OS=Escherichia coli (strain ... [more]
HINT_ECO578.027e-2753.70HIT-like protein hinT OS=Escherichia coli O157:H7 ... [more]
Y961_HAEIN1.417e-2352.29HIT-like protein HI0961 OS=Haemophilus influenzae ... [more]
PKIA_DICDI4.123e-2344.96Protein pkiA OS=Dictyostelium discoideum GN=pkiA P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00980 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00980 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623900 ID=BQ623900; Name=BQ623900; organism=Citrus sinensis; type=EST; length=596bp
CATTTGTCTGCCGTCGTCATGGCTTCAGAGAACGAGGCTGCTGTTGCAGC
CGTTCCTTCTGATTCGCCTACCATATTTGACAAAATAATTAACAAAGAAA
TCCCATCTAAAGTTGTTTATGAGGATGATAAGGTCTTAGCCTTTAGGGAC
ATAGATCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAGTGAAGGA
TGGCTTGACTGGACTTTCAAAGGCCGAGGAAAGGCATTGCGAAATTCTTG
GCCGCCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGGACTAGAA
GACGGCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTCAATCAGT
TTTTCACATCCACGTCCACCTCCTAGGAGGACGACAAATGAACTGGCCCC
CGGGCTAAGATGAAGTATTTTGGGTGCCAGATTCTCTTATGAAAAAATGA
TTATGCCCTTTGTACTTTAATATGCATCAAGCTGCATCGAGCTTCAAATA
ACAAACTAATTGGTGGCTGCTTTGAGCCACATTATTTGATATGATGTGAA
ATGACATTGTGCTGAAAGGAGAAAAAGACCTTCAATAATAAGGGTG
back to top